{
  "analyses": {
    "age_association": {
      "reason_code": "age_metadata_absent",
      "status": "not_computed"
    },
    "cellchat": {
      "reason_code": "disabled_cross_tissue",
      "status": "not_computed"
    },
    "coexpression": {
      "analysis_scope": "exploratory_stratified_sample",
      "data_id": "SP084",
      "generated_at": "2026-08-08T08:17:27.151709Z",
      "independent_biological_replicates": false,
      "inferential_scope": "descriptive_cell_level",
      "interpretation": "Exploratory expression-correlation modules.",
      "method_status": "validated_exploratory",
      "module_sizes": {
        "1": 1,
        "10": 2,
        "11": 4,
        "12": 3,
        "13": 3,
        "14": 2,
        "15": 5,
        "16": 2,
        "17": 5,
        "18": 2,
        "19": 2,
        "2": 1,
        "20": 1943,
        "21": 1,
        "22": 1,
        "23": 1,
        "24": 1,
        "25": 1,
        "26": 1,
        "27": 1,
        "28": 1,
        "29": 1,
        "3": 3,
        "30": 1,
        "4": 2,
        "5": 1,
        "6": 1,
        "7": 3,
        "8": 2,
        "9": 3
      },
      "n_genes_analyzed": 2000,
      "n_modules": 30,
      "sampling": {
        "n_cells": 9034,
        "seed": 20260808,
        "source_cells": 98853,
        "strategy": "tissue_cell_type_stratified"
      },
      "status": "validated_exploratory",
      "validated_exploratory": true
    },
    "deg": {
      "analysis_scope": "exploratory_stratified_sample",
      "data_id": "SP084",
      "generated_at": "2026-08-08T08:17:27.151709Z",
      "independent_biological_replicates": false,
      "inferential_scope": "descriptive_cell_level",
      "interpretation": "Descriptive cell-level marker ranking; not donor-level inference.",
      "method_status": "validated_exploratory",
      "n_celltypes": 37,
      "sampling": {
        "n_cells": 9034,
        "seed": 20260808,
        "source_cells": 98853,
        "strategy": "tissue_cell_type_stratified"
      },
      "significant_degs": 3372,
      "status": "validated_exploratory",
      "total_degs_tested": 3800,
      "validated_exploratory": true
    },
    "disease": {
      "analysis_scope": "exploratory_stratified_sample",
      "data_id": "SP084",
      "diseases_tested": 15,
      "generated_at": "2026-08-08T08:17:27.151709Z",
      "independent_biological_replicates": false,
      "inferential_scope": "descriptive_cell_level",
      "interpretation": "Curated disease-gene overlap; descriptive only.",
      "method_status": "validated_exploratory",
      "sampling": {
        "n_cells": 9034,
        "seed": 20260808,
        "source_cells": 98853,
        "strategy": "tissue_cell_type_stratified"
      },
      "significant_associations": 16,
      "status": "validated_exploratory",
      "top_diseases": [
        "Cardiovascular disease",
        "Alzheimer disease",
        "Inflammatory bowel disease",
        "Alzheimer disease",
        "Inflammatory bowel disease"
      ],
      "validated_exploratory": true
    },
    "drug": {
      "analysis_scope": "exploratory_stratified_sample",
      "celltypes_analyzed": 38,
      "data_id": "SP084",
      "drugs_screened": 18,
      "drugs_with_targets": 16,
      "generated_at": "2026-08-08T08:17:27.151709Z",
      "independent_biological_replicates": false,
      "inferential_scope": "descriptive_cell_level",
      "interpretation": "Curated drug-target expression matching; descriptive only.",
      "method_status": "validated_exploratory",
      "sampling": {
        "n_cells": 9034,
        "seed": 20260808,
        "source_cells": 98853,
        "strategy": "tissue_cell_type_stratified"
      },
      "status": "validated_exploratory",
      "top_drugs": [
        "Cyclosporine",
        "Rituximab",
        "Sirolimus",
        "Tocilizumab",
        "Aspirin"
      ],
      "validated_exploratory": true
    },
    "grn": {
      "analysis_scope": "exploratory_stratified_sample",
      "data_id": "SP084",
      "generated_at": "2026-08-08T08:17:27.151709Z",
      "independent_biological_replicates": false,
      "inferential_scope": "descriptive_cell_level",
      "interpretation": "Exploratory TF-target associations; not causal inference.",
      "method_status": "validated_exploratory",
      "sampling": {
        "n_cells": 9034,
        "seed": 20260808,
        "source_cells": 98853,
        "strategy": "tissue_cell_type_stratified"
      },
      "status": "validated_exploratory",
      "top_tfs": {
        "CEBPA": 4,
        "CEBPB": 39,
        "FOS": 16,
        "FOXA1": 1,
        "GATA1": 7,
        "GATA2": 1,
        "HNF4A": 5,
        "JUN": 19,
        "SOX2": 2,
        "STAT3": 1
      },
      "total_tf_target_pairs": 99,
      "total_tfs_analyzed": 81,
      "validated_exploratory": true
    },
    "metabolism": {
      "analysis_scope": "exploratory_stratified_sample",
      "celltypes_analyzed": 38,
      "data_id": "SP084",
      "generated_at": "2026-08-08T08:17:27.151709Z",
      "independent_biological_replicates": false,
      "inferential_scope": "descriptive_cell_level",
      "interpretation": "Curated metabolic gene-set scores; descriptive only.",
      "method_status": "validated_exploratory",
      "pathways_detected": 12,
      "pathways_scored": 12,
      "sampling": {
        "n_cells": 9034,
        "seed": 20260808,
        "source_cells": 98853,
        "strategy": "tissue_cell_type_stratified"
      },
      "status": "validated_exploratory",
      "top_pathways": [
        "Oxidative Phosphorylation",
        "Glycolysis",
        "TCA Cycle",
        "Glutamine Metabolism",
        "Purine Metabolism"
      ],
      "validated_exploratory": true
    },
    "trajectory": {
      "reason_code": "no_lineage_root",
      "status": "not_computed"
    }
  },
  "analysis_scope": "exploratory_stratified_sample",
  "data_id": "SP084",
  "generated_at": "2026-08-08T08:17:27.151709Z",
  "sample_cells": 9034,
  "sampling": {
    "n_cells": 9034,
    "seed": 20260808,
    "source_cells": 98853,
    "strategy": "tissue_cell_type_stratified"
  },
  "schema_version": 1,
  "source_cells": 98853,
  "status": "validated_exploratory",
  "validated_exploratory": true
}