{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "BRCA-071-13-1A",
  "donor_id": "BRCA-071-13-1A",
  "summary": {
    "sample_id": "BRCA-071-13-1A",
    "donor_id": "BRCA-071-13-1A",
    "cancer_type": "BRCA",
    "health_status": "Breast Cancer; PBMC",
    "tissue_or_cell_source": "PBMC",
    "cells_in_umap_file": 6037,
    "cells_analyzed": 1999,
    "clusters": 21,
    "genes_read": 20360,
    "genes_nonzero_in_analyzed_cells": 19540,
    "mean_umi": 6147,
    "mean_genes": 2095,
    "mean_pct_mito": 3.429,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=BRCA-071-13-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/BRCA-071-13-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-13-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-13-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/BRCA-071-13-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "cells": 388,
      "mean_umi": 6707.4613,
      "median_genes": 2040,
      "mean_pct_mito": 2.6948
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "cells": 317,
      "mean_umi": 7376.2145,
      "median_genes": 2516,
      "mean_pct_mito": 3.7079
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "cells": 214,
      "mean_umi": 5521.3318,
      "median_genes": 2037.5,
      "mean_pct_mito": 3.1393
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "cells": 203,
      "mean_umi": 5188.6502,
      "median_genes": 2138,
      "mean_pct_mito": 3.4352
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "cells": 128,
      "mean_umi": 5818.8359,
      "median_genes": 2137.5,
      "mean_pct_mito": 2.8708
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "cells": 117,
      "mean_umi": 4884.2479,
      "median_genes": 1937,
      "mean_pct_mito": 3.5729
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "cells": 102,
      "mean_umi": 9255.2941,
      "median_genes": 3012.5,
      "mean_pct_mito": 4.0034
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "cells": 100,
      "mean_umi": 5671.61,
      "median_genes": 1955,
      "mean_pct_mito": 3.3492
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "cells": 98,
      "mean_umi": 4752.2653,
      "median_genes": 1672,
      "mean_pct_mito": 3.3673
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "cells": 75,
      "mean_umi": 2531.1867,
      "median_genes": 1491,
      "mean_pct_mito": 6.7676
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "cells": 74,
      "mean_umi": 6827.1081,
      "median_genes": 2045,
      "mean_pct_mito": 3.6424
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "cells": 62,
      "mean_umi": 5734.4194,
      "median_genes": 1974,
      "mean_pct_mito": 4.1564
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "cells": 29,
      "mean_umi": 4762.6552,
      "median_genes": 1899,
      "mean_pct_mito": 3.3456
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "cells": 19,
      "mean_umi": 5388.2632,
      "median_genes": 1883,
      "mean_pct_mito": 3.1261
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "cells": 18,
      "mean_umi": 6424.7222,
      "median_genes": 1978,
      "mean_pct_mito": 2.7879
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "cells": 17,
      "mean_umi": 3106.7059,
      "median_genes": 624,
      "mean_pct_mito": 2.5488
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "cells": 13,
      "mean_umi": 5621,
      "median_genes": 2145,
      "mean_pct_mito": 2.9745
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "cells": 9,
      "mean_umi": 16227.2222,
      "median_genes": 3888,
      "mean_pct_mito": 3.7525
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "cells": 6,
      "mean_umi": 5539.5,
      "median_genes": 2003,
      "mean_pct_mito": 3.9189
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "cells": 5,
      "mean_umi": 552,
      "median_genes": 363,
      "mean_pct_mito": 1.2506
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "cells": 5,
      "mean_umi": 20897.6,
      "median_genes": 3611,
      "mean_pct_mito": 3.8607
    }
  ],
  "program_scores": [
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 2.1262
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.5482
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.4313
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7506
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.5606
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.4616
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3895
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3745
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3438
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3408
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3271
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3065
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2871
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2813
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2798
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2321
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1872
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1844
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1188
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0786
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0347
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1732
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1609
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1511
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1436
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1248
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1228
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1198
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1183
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.104
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0807
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0722
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0714
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0642
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0593
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0558
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0454
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0414
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0318
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0237
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0051
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.4177
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.3888
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.2104
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.1953
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.1132
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0994
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0758
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0697
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0593
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0535
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0462
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0439
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0384
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0236
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0231
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0219
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0166
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0145
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0107
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0048
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 5,
      "mean_log1p_score": 0.0024
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0326
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0308
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0077
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0068
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0028
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0022
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0022
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0017
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0.0014
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0749
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0578
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0204
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0193
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0143
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0142
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0139
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0117
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0105
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0091
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0085
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0069
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0059
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0045
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0028
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0.0018
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "Fibroblast_stroma",
      "genes_used": 4,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 2.0797
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.9075
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.7928
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4515
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.415
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3749
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3019
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3014
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2646
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2218
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2136
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1741
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1705
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1689
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1281
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0938
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0845
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0805
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0524
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0519
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0451
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0959
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0658
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0609
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0583
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0512
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0474
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0448
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.044
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0437
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.043
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0412
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0383
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0371
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.033
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0309
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0165
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0155
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0151
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.01
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0097
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 2.0182
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 2.0108
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.7831
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.6744
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.6375
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.5519
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.4548
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.1715
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.8746
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.747
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.5509
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.5403
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.2582
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.2208
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.176
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.093
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0748
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0452
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0433
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0227
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    }
  ],
  "program_summary": [
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 21,
      "mean_score": 0.8071,
      "max_score": 2.0182,
      "mean_genes_used": 10
    },
    {
      "program": "B_plasma",
      "cluster_count": 21,
      "mean_score": 0.5069,
      "max_score": 2.1262,
      "mean_genes_used": 8
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 21,
      "mean_score": 0.4464,
      "max_score": 2.0797,
      "mean_genes_used": 9
    },
    {
      "program": "Endothelial",
      "cluster_count": 21,
      "mean_score": 0.0919,
      "max_score": 0.4177,
      "mean_genes_used": 5
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 21,
      "mean_score": 0.0843,
      "max_score": 0.1732,
      "mean_genes_used": 8
    },
    {
      "program": "Proliferation",
      "cluster_count": 21,
      "mean_score": 0.0382,
      "max_score": 0.0959,
      "mean_genes_used": 7
    },
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 21,
      "mean_score": 0.0132,
      "max_score": 0.0749,
      "mean_genes_used": 4
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 21,
      "mean_score": 0.0042,
      "max_score": 0.0326,
      "mean_genes_used": 5
    }
  ],
  "top_markers": [
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "S100A8",
      "score_log1p_diff": 4.5322,
      "mean_log1p_expr": 4.7262,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "rank": 1,
      "gene": "JCHAIN",
      "score_log1p_diff": 4.0506,
      "mean_log1p_expr": 4.1078,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "rank": 1,
      "gene": "CST3",
      "score_log1p_diff": 3.8327,
      "mean_log1p_expr": 4.5874,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "GNLY",
      "score_log1p_diff": 3.299,
      "mean_log1p_expr": 3.9437,
      "detect_fraction": 0.9915
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "IFI30",
      "score_log1p_diff": 2.996,
      "mean_log1p_expr": 3.6642,
      "detect_fraction": 0.9902
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "rank": 1,
      "gene": "GNLY",
      "score_log1p_diff": 2.8857,
      "mean_log1p_expr": 3.7148,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "TRBV3-1",
      "score_log1p_diff": 2.8031,
      "mean_log1p_expr": 2.8354,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "PPBP",
      "score_log1p_diff": 2.6309,
      "mean_log1p_expr": 2.6982,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "NKG7",
      "score_log1p_diff": 2.5348,
      "mean_log1p_expr": 3.7309,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "TRBV10-2",
      "score_log1p_diff": 2.5142,
      "mean_log1p_expr": 2.5326,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "NKG7",
      "score_log1p_diff": 2.243,
      "mean_log1p_expr": 3.5529,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.2156,
      "mean_log1p_expr": 3.1752,
      "detect_fraction": 0.9865
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "CD74",
      "score_log1p_diff": 2.1723,
      "mean_log1p_expr": 4.6277,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 2.0331,
      "mean_log1p_expr": 3.248,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "LTB",
      "score_log1p_diff": 1.828,
      "mean_log1p_expr": 2.5751,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "TRBV7-6",
      "score_log1p_diff": 1.7193,
      "mean_log1p_expr": 1.7267,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "GZMK",
      "score_log1p_diff": 1.649,
      "mean_log1p_expr": 1.954,
      "detect_fraction": 0.9516
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "IL32",
      "score_log1p_diff": 1.4717,
      "mean_log1p_expr": 3.0081,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "rank": 1,
      "gene": "NEAT1",
      "score_log1p_diff": 1.4409,
      "mean_log1p_expr": 2.1445,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "CD8B",
      "score_log1p_diff": 1.2886,
      "mean_log1p_expr": 1.6264,
      "detect_fraction": 0.94
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "ARHGAP15",
      "score_log1p_diff": 1.2377,
      "mean_log1p_expr": 1.9896,
      "detect_fraction": 0.9733
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "S100A9",
      "score_log1p_diff": 3.7402,
      "mean_log1p_expr": 3.9523,
      "detect_fraction": 0.9811
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "rank": 2,
      "gene": "LYZ",
      "score_log1p_diff": 3.6346,
      "mean_log1p_expr": 4.3481,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "rank": 2,
      "gene": "MZB1",
      "score_log1p_diff": 3.1367,
      "mean_log1p_expr": 3.165,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "LST1",
      "score_log1p_diff": 2.9075,
      "mean_log1p_expr": 3.3115,
      "detect_fraction": 0.9902
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "rank": 2,
      "gene": "TRBV12-4",
      "score_log1p_diff": 2.3743,
      "mean_log1p_expr": 2.3862,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "GNLY",
      "score_log1p_diff": 2.2693,
      "mean_log1p_expr": 2.8766,
      "detect_fraction": 0.8424
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "NKG7",
      "score_log1p_diff": 2.1809,
      "mean_log1p_expr": 3.5067,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 2.1734,
      "mean_log1p_expr": 4.6547,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.1617,
      "mean_log1p_expr": 3.0973,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "CCL5",
      "score_log1p_diff": 2.1285,
      "mean_log1p_expr": 3.4247,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "NRGN",
      "score_log1p_diff": 2.0426,
      "mean_log1p_expr": 2.1976,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "GZMH",
      "score_log1p_diff": 1.9996,
      "mean_log1p_expr": 2.6999,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "NKG7",
      "score_log1p_diff": 1.9983,
      "mean_log1p_expr": 3.2379,
      "detect_fraction": 0.9907
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "GNLY",
      "score_log1p_diff": 1.9192,
      "mean_log1p_expr": 2.7291,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "IL7R",
      "score_log1p_diff": 1.6407,
      "mean_log1p_expr": 2.0542,
      "detect_fraction": 0.9459
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "KLRB1",
      "score_log1p_diff": 1.637,
      "mean_log1p_expr": 2.0552,
      "detect_fraction": 0.9194
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "TRBV7-5",
      "score_log1p_diff": 1.5575,
      "mean_log1p_expr": 1.5589,
      "detect_fraction": 0.8333
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "IL7R",
      "score_log1p_diff": 1.1784,
      "mean_log1p_expr": 1.8514,
      "detect_fraction": 0.98
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "rank": 2,
      "gene": "NAMPT",
      "score_log1p_diff": 1.1766,
      "mean_log1p_expr": 1.3102,
      "detect_fraction": 0.8
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "MBNL1",
      "score_log1p_diff": 1.0462,
      "mean_log1p_expr": 2.0582,
      "detect_fraction": 0.9733
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "CD27",
      "score_log1p_diff": 0.8056,
      "mean_log1p_expr": 1.0757,
      "detect_fraction": 0.7368
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "LYZ",
      "score_log1p_diff": 3.556,
      "mean_log1p_expr": 3.722,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "rank": 3,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.3827,
      "mean_log1p_expr": 4.409,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "rank": 3,
      "gene": "IGKC",
      "score_log1p_diff": 3.1064,
      "mean_log1p_expr": 3.1581,
      "detect_fraction": 0.6
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "SERPINA1",
      "score_log1p_diff": 2.7392,
      "mean_log1p_expr": 3.1138,
      "detect_fraction": 0.9608
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "CCL5",
      "score_log1p_diff": 2.1587,
      "mean_log1p_expr": 3.4648,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "CD79A",
      "score_log1p_diff": 2.1579,
      "mean_log1p_expr": 2.2609,
      "detect_fraction": 0.9796
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "CD79A",
      "score_log1p_diff": 2.1525,
      "mean_log1p_expr": 2.2816,
      "detect_fraction": 0.9865
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "rank": 3,
      "gene": "NKG7",
      "score_log1p_diff": 2.1288,
      "mean_log1p_expr": 3.5759,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "TRBV28",
      "score_log1p_diff": 2.0493,
      "mean_log1p_expr": 2.1156,
      "detect_fraction": 0.9297
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "NKG7",
      "score_log1p_diff": 1.9595,
      "mean_log1p_expr": 3.4002,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "PRF1",
      "score_log1p_diff": 1.8727,
      "mean_log1p_expr": 2.4427,
      "detect_fraction": 0.9951
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "NKG7",
      "score_log1p_diff": 1.6906,
      "mean_log1p_expr": 3.1196,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "TUBB1",
      "score_log1p_diff": 1.6593,
      "mean_log1p_expr": 1.6713,
      "detect_fraction": 0.9412
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "GZMH",
      "score_log1p_diff": 1.4779,
      "mean_log1p_expr": 2.0329,
      "detect_fraction": 0.9159
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "IL7R",
      "score_log1p_diff": 1.4237,
      "mean_log1p_expr": 2.1115,
      "detect_fraction": 0.9355
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "LDHB",
      "score_log1p_diff": 1.2519,
      "mean_log1p_expr": 1.9919,
      "detect_fraction": 0.9845
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "rank": 3,
      "gene": "S100A8",
      "score_log1p_diff": 1.1446,
      "mean_log1p_expr": 2.0544,
      "detect_fraction": 0.6
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "LTB",
      "score_log1p_diff": 1.0342,
      "mean_log1p_expr": 2.1268,
      "detect_fraction": 0.8333
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "CD8A",
      "score_log1p_diff": 1.027,
      "mean_log1p_expr": 1.4382,
      "detect_fraction": 0.95
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "RIPOR2",
      "score_log1p_diff": 0.9689,
      "mean_log1p_expr": 1.9058,
      "detect_fraction": 0.9867
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "LTB",
      "score_log1p_diff": 0.7963,
      "mean_log1p_expr": 1.8906,
      "detect_fraction": 0.8947
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_18",
      "rank": 4,
      "gene": "CD74",
      "score_log1p_diff": 3.1808,
      "mean_log1p_expr": 5.7283,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "CST3",
      "score_log1p_diff": 2.9827,
      "mean_log1p_expr": 3.2817,
      "detect_fraction": 0.9968
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_21",
      "rank": 4,
      "gene": "IGLV2-8",
      "score_log1p_diff": 2.9314,
      "mean_log1p_expr": 2.9417,
      "detect_fraction": 0.4
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "CST3",
      "score_log1p_diff": 2.7381,
      "mean_log1p_expr": 3.3704,
      "detect_fraction": 0.9804
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "MS4A1",
      "score_log1p_diff": 2.0353,
      "mean_log1p_expr": 2.1496,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "TCL1A",
      "score_log1p_diff": 1.9664,
      "mean_log1p_expr": 1.9706,
      "detect_fraction": 0.9694
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_19",
      "rank": 4,
      "gene": "CCL5",
      "score_log1p_diff": 1.9649,
      "mean_log1p_expr": 3.3915,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "CCL5",
      "score_log1p_diff": 1.9225,
      "mean_log1p_expr": 3.3425,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "GZMB",
      "score_log1p_diff": 1.8438,
      "mean_log1p_expr": 2.2727,
      "detect_fraction": 0.9458
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "GZMB",
      "score_log1p_diff": 1.7765,
      "mean_log1p_expr": 2.2887,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "CD8A",
      "score_log1p_diff": 1.7591,
      "mean_log1p_expr": 2.109,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "CCL5",
      "score_log1p_diff": 1.6792,
      "mean_log1p_expr": 3.0874,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "CAVIN2",
      "score_log1p_diff": 1.5677,
      "mean_log1p_expr": 1.5933,
      "detect_fraction": 0.9412
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "CD8A",
      "score_log1p_diff": 1.3214,
      "mean_log1p_expr": 1.6425,
      "detect_fraction": 0.8785
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "IL32",
      "score_log1p_diff": 1.1559,
      "mean_log1p_expr": 2.6703,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_20",
      "rank": 4,
      "gene": "SLC25A37",
      "score_log1p_diff": 1.0913,
      "mean_log1p_expr": 1.1901,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-13-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "CD3E",
      "score_log1p_diff": 1.044,
      "mean_log1p_expr": 2.0389,
      "detect_fraction": 0.9871
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
