{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "BRCA-071-14-1A",
  "donor_id": "BRCA-071-14-1A",
  "summary": {
    "sample_id": "BRCA-071-14-1A",
    "donor_id": "BRCA-071-14-1A",
    "cancer_type": "BRCA",
    "health_status": "Breast Cancer; Normal",
    "tissue_or_cell_source": "Normal",
    "cells_in_umap_file": 4708,
    "cells_analyzed": 1999,
    "clusters": 17,
    "genes_read": 22979,
    "genes_nonzero_in_analyzed_cells": 22063,
    "mean_umi": 4860,
    "mean_genes": 1738,
    "mean_pct_mito": 5.584,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=BRCA-071-14-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/BRCA-071-14-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-14-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-14-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/BRCA-071-14-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "cells": 240,
      "mean_umi": 4090.4833,
      "median_genes": 1684.5,
      "mean_pct_mito": 6.8753
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "cells": 228,
      "mean_umi": 4311.5395,
      "median_genes": 1647.5,
      "mean_pct_mito": 6.163
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "cells": 221,
      "mean_umi": 6248.8507,
      "median_genes": 2209,
      "mean_pct_mito": 5.3022
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "cells": 215,
      "mean_umi": 4776.9116,
      "median_genes": 1702,
      "mean_pct_mito": 6.1061
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "cells": 189,
      "mean_umi": 2819.5397,
      "median_genes": 1159,
      "mean_pct_mito": 4.6604
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "cells": 188,
      "mean_umi": 6095.4681,
      "median_genes": 2095.5,
      "mean_pct_mito": 5.4775
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "cells": 149,
      "mean_umi": 5346.3557,
      "median_genes": 1869,
      "mean_pct_mito": 6.8754
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "cells": 148,
      "mean_umi": 3079.3108,
      "median_genes": 1202.5,
      "mean_pct_mito": 4.114
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "cells": 90,
      "mean_umi": 5134.0778,
      "median_genes": 1471.5,
      "mean_pct_mito": 4.7265
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "cells": 85,
      "mean_umi": 7024.1176,
      "median_genes": 2192,
      "mean_pct_mito": 6.8023
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "cells": 67,
      "mean_umi": 3394.6866,
      "median_genes": 1235,
      "mean_pct_mito": 4.7569
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "cells": 55,
      "mean_umi": 3590.0727,
      "median_genes": 1378,
      "mean_pct_mito": 4.3852
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "cells": 34,
      "mean_umi": 7973.3824,
      "median_genes": 385,
      "mean_pct_mito": 2.6492
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "cells": 34,
      "mean_umi": 9169.9412,
      "median_genes": 2760.5,
      "mean_pct_mito": 4.4201
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "cells": 20,
      "mean_umi": 5331.7,
      "median_genes": 1648,
      "mean_pct_mito": 5.6317
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "cells": 20,
      "mean_umi": 9494.75,
      "median_genes": 2408,
      "mean_pct_mito": 3.7122
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "cells": 16,
      "mean_umi": 3000.6875,
      "median_genes": 1324.5,
      "mean_pct_mito": 5.4741
    }
  ],
  "program_scores": [
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.4869
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7225
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.5468
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3024
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2227
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1682
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1672
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1232
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1125
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0861
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0563
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0541
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0486
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0362
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0333
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.028
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0142
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.2165
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0784
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0783
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0572
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0537
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0334
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0265
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0264
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0108
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0102
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0095
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0087
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.008
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0053
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.004
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.002
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.9055
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.6958
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.2355
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1591
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1478
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1286
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1189
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0932
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0919
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0659
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0655
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0618
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.056
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0513
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0404
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0227
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.006
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.8668
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0573
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0303
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0193
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0149
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0122
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0084
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0069
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0052
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0048
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.004
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0037
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0036
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0034
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0025
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0023
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0016
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.2588
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.8488
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.7249
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.5484
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.2736
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.2044
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.1945
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.0784
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.3339
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1815
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1723
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1712
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1412
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1125
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0701
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0626
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0611
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.7944
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.0642
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1241
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1213
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0452
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0129
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0126
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0113
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0112
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0098
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0096
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0084
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0071
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0067
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0062
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0059
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0045
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1149
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0652
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0512
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0432
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0356
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0355
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0349
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0301
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0286
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0275
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0261
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0252
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0249
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0195
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0177
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0167
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0146
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.2363
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4697
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4033
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0561
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0263
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0182
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.006
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0049
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0043
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0033
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0021
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.002
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0019
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0005
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    }
  ],
  "program_summary": [
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 17,
      "mean_score": 0.7905,
      "max_score": 2.2588,
      "mean_genes_used": 8
    },
    {
      "program": "B_plasma",
      "cluster_count": 17,
      "mean_score": 0.2476,
      "max_score": 1.4869,
      "mean_genes_used": 8
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 17,
      "mean_score": 0.1915,
      "max_score": 1.7944,
      "mean_genes_used": 9
    },
    {
      "program": "Endothelial",
      "cluster_count": 17,
      "mean_score": 0.1733,
      "max_score": 0.9055,
      "mean_genes_used": 7
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 17,
      "mean_score": 0.1315,
      "max_score": 1.2363,
      "mean_genes_used": 10
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 17,
      "mean_score": 0.0616,
      "max_score": 0.8668,
      "mean_genes_used": 8
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 17,
      "mean_score": 0.037,
      "max_score": 0.2165,
      "mean_genes_used": 8
    },
    {
      "program": "Proliferation",
      "cluster_count": 17,
      "mean_score": 0.036,
      "max_score": 0.1149,
      "mean_genes_used": 7
    }
  ],
  "top_markers": [
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "CCL4L2",
      "score_log1p_diff": 5.3239,
      "mean_log1p_expr": 5.4073,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "JCHAIN",
      "score_log1p_diff": 5.211,
      "mean_log1p_expr": 5.3299,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "CCL21",
      "score_log1p_diff": 3.9351,
      "mean_log1p_expr": 3.9472,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "TAGLN",
      "score_log1p_diff": 3.4985,
      "mean_log1p_expr": 3.91,
      "detect_fraction": 0.9933
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "SFRP2",
      "score_log1p_diff": 3.4737,
      "mean_log1p_expr": 4.7107,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "CD74",
      "score_log1p_diff": 3.4189,
      "mean_log1p_expr": 4.098,
      "detect_fraction": 0.9889
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "NKG7",
      "score_log1p_diff": 3.0111,
      "mean_log1p_expr": 3.051,
      "detect_fraction": 0.9818
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "AZGP1",
      "score_log1p_diff": 2.9888,
      "mean_log1p_expr": 3.0039,
      "detect_fraction": 0.95
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "CFD",
      "score_log1p_diff": 2.7955,
      "mean_log1p_expr": 5.1886,
      "detect_fraction": 0.9955
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "COL1A1",
      "score_log1p_diff": 2.6189,
      "mean_log1p_expr": 3.2431,
      "detect_fraction": 0.9706
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "CXCL14",
      "score_log1p_diff": 2.5331,
      "mean_log1p_expr": 3.8881,
      "detect_fraction": 0.9681
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "FABP4",
      "score_log1p_diff": 2.3217,
      "mean_log1p_expr": 2.5676,
      "detect_fraction": 0.8995
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "APOD",
      "score_log1p_diff": 1.9976,
      "mean_log1p_expr": 4.4969,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "APOD",
      "score_log1p_diff": 1.9647,
      "mean_log1p_expr": 4.4806,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 1.8273,
      "mean_log1p_expr": 1.9793,
      "detect_fraction": 0.9851
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "APOD",
      "score_log1p_diff": 1.778,
      "mean_log1p_expr": 4.2917,
      "detect_fraction": 0.9875
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "SRGN",
      "score_log1p_diff": 1.7419,
      "mean_log1p_expr": 2.1479,
      "detect_fraction": 0.9797
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 4.9973,
      "mean_log1p_expr": 5.7804,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "IGHA1",
      "score_log1p_diff": 3.4877,
      "mean_log1p_expr": 3.5678,
      "detect_fraction": 0.9118
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "SFRP4",
      "score_log1p_diff": 3.2033,
      "mean_log1p_expr": 3.621,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "ACTA2",
      "score_log1p_diff": 3.1069,
      "mean_log1p_expr": 3.2136,
      "detect_fraction": 0.9597
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "TFF3",
      "score_log1p_diff": 2.906,
      "mean_log1p_expr": 2.93,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.8781,
      "mean_log1p_expr": 3.0855,
      "detect_fraction": 0.9778
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "PIP",
      "score_log1p_diff": 2.5988,
      "mean_log1p_expr": 2.6195,
      "detect_fraction": 0.8
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "FBN1",
      "score_log1p_diff": 2.5751,
      "mean_log1p_expr": 2.8557,
      "detect_fraction": 0.9706
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "DCN",
      "score_log1p_diff": 2.3379,
      "mean_log1p_expr": 4.7802,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "APOD",
      "score_log1p_diff": 2.3095,
      "mean_log1p_expr": 4.8194,
      "detect_fraction": 0.9894
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "GNLY",
      "score_log1p_diff": 2.2426,
      "mean_log1p_expr": 2.2497,
      "detect_fraction": 0.7818
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "CFD",
      "score_log1p_diff": 1.8817,
      "mean_log1p_expr": 4.3693,
      "detect_fraction": 0.9956
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "BTG1",
      "score_log1p_diff": 1.787,
      "mean_log1p_expr": 2.7528,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "BTG1",
      "score_log1p_diff": 1.6501,
      "mean_log1p_expr": 2.5536,
      "detect_fraction": 0.9932
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 1.6331,
      "mean_log1p_expr": 2.3117,
      "detect_fraction": 0.9365
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "DCN",
      "score_log1p_diff": 1.2604,
      "mean_log1p_expr": 3.8256,
      "detect_fraction": 0.9953
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "DCN",
      "score_log1p_diff": 1.084,
      "mean_log1p_expr": 3.6546,
      "detect_fraction": 0.9917
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "IL1B",
      "score_log1p_diff": 4.7293,
      "mean_log1p_expr": 4.8277,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "MYL9",
      "score_log1p_diff": 2.9342,
      "mean_log1p_expr": 3.5601,
      "detect_fraction": 0.9866
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "MGP",
      "score_log1p_diff": 2.9052,
      "mean_log1p_expr": 5.1634,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 2.6044,
      "mean_log1p_expr": 2.8806,
      "detect_fraction": 0.9556
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "COL1A2",
      "score_log1p_diff": 2.4352,
      "mean_log1p_expr": 3.4948,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "CFD",
      "score_log1p_diff": 2.1513,
      "mean_log1p_expr": 4.6511,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "IGKC",
      "score_log1p_diff": 2.1184,
      "mean_log1p_expr": 2.1746,
      "detect_fraction": 0.5882
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "CST7",
      "score_log1p_diff": 2.0938,
      "mean_log1p_expr": 2.1919,
      "detect_fraction": 0.9818
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "MMRN1",
      "score_log1p_diff": 2.0758,
      "mean_log1p_expr": 2.0781,
      "detect_fraction": 0.9375
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "CCN5",
      "score_log1p_diff": 2.0682,
      "mean_log1p_expr": 2.6239,
      "detect_fraction": 0.9638
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "KRT19",
      "score_log1p_diff": 2.0058,
      "mean_log1p_expr": 2.0155,
      "detect_fraction": 0.95
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "HLA-B",
      "score_log1p_diff": 1.6739,
      "mean_log1p_expr": 3.2239,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "DCN",
      "score_log1p_diff": 1.6678,
      "mean_log1p_expr": 4.1784,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "IL32",
      "score_log1p_diff": 1.5916,
      "mean_log1p_expr": 1.8535,
      "detect_fraction": 0.973
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "CD36",
      "score_log1p_diff": 1.4436,
      "mean_log1p_expr": 1.5195,
      "detect_fraction": 0.7937
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "EGR1",
      "score_log1p_diff": 1.1933,
      "mean_log1p_expr": 2.995,
      "detect_fraction": 0.9907
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "LAMA2",
      "score_log1p_diff": 1.0553,
      "mean_log1p_expr": 1.723,
      "detect_fraction": 0.975
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "CCL4",
      "score_log1p_diff": 4.7281,
      "mean_log1p_expr": 4.851,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "CLU",
      "score_log1p_diff": 2.8459,
      "mean_log1p_expr": 3.7247,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "rank": 4,
      "gene": "MFAP5",
      "score_log1p_diff": 2.4004,
      "mean_log1p_expr": 2.7228,
      "detect_fraction": 0.9118
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "TPM2",
      "score_log1p_diff": 2.3964,
      "mean_log1p_expr": 2.7735,
      "detect_fraction": 0.9732
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "HLA-DPA1",
      "score_log1p_diff": 2.2485,
      "mean_log1p_expr": 2.4947,
      "detect_fraction": 0.9333
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "LYVE1",
      "score_log1p_diff": 1.9181,
      "mean_log1p_expr": 1.9382,
      "detect_fraction": 0.875
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "SSR4",
      "score_log1p_diff": 1.9081,
      "mean_log1p_expr": 2.581,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "IGFBP6",
      "score_log1p_diff": 1.8866,
      "mean_log1p_expr": 2.9595,
      "detect_fraction": 0.991
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "GZMB",
      "score_log1p_diff": 1.8817,
      "mean_log1p_expr": 1.8904,
      "detect_fraction": 0.9273
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "rank": 4,
      "gene": "MGP",
      "score_log1p_diff": 1.8556,
      "mean_log1p_expr": 4.2187,
      "detect_fraction": 0.95
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "MGP",
      "score_log1p_diff": 1.7943,
      "mean_log1p_expr": 4.0072,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "CD8A",
      "score_log1p_diff": 1.586,
      "mean_log1p_expr": 1.6229,
      "detect_fraction": 0.9403
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "HLA-B",
      "score_log1p_diff": 1.5243,
      "mean_log1p_expr": 3.0176,
      "detect_fraction": 0.9932
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "CLDN5",
      "score_log1p_diff": 1.3585,
      "mean_log1p_expr": 1.3879,
      "detect_fraction": 0.8519
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "GSN",
      "score_log1p_diff": 1.0843,
      "mean_log1p_expr": 3.5868,
      "detect_fraction": 0.9912
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "CFD",
      "score_log1p_diff": 1.0671,
      "mean_log1p_expr": 3.6545,
      "detect_fraction": 0.986
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "NR4A1",
      "score_log1p_diff": 0.859,
      "mean_log1p_expr": 2.0957,
      "detect_fraction": 0.9292
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_16",
      "rank": 5,
      "gene": "HLA-DRA",
      "score_log1p_diff": 4.581,
      "mean_log1p_expr": 4.8722,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_10",
      "rank": 5,
      "gene": "IGFBP6",
      "score_log1p_diff": 2.3466,
      "mean_log1p_expr": 3.5283,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_14",
      "rank": 5,
      "gene": "CLEC3B",
      "score_log1p_diff": 2.2525,
      "mean_log1p_expr": 3.1223,
      "detect_fraction": 0.8529
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_7",
      "rank": 5,
      "gene": "MUSTN1",
      "score_log1p_diff": 2.0963,
      "mean_log1p_expr": 2.1419,
      "detect_fraction": 0.8591
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_9",
      "rank": 5,
      "gene": "HLA-DPB1",
      "score_log1p_diff": 2.0194,
      "mean_log1p_expr": 2.2448,
      "detect_fraction": 0.9
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_17",
      "rank": 5,
      "gene": "FABP4",
      "score_log1p_diff": 1.8999,
      "mean_log1p_expr": 2.3501,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_12",
      "rank": 5,
      "gene": "HLA-B",
      "score_log1p_diff": 1.8226,
      "mean_log1p_expr": 3.3786,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_3",
      "rank": 5,
      "gene": "GSN",
      "score_log1p_diff": 1.798,
      "mean_log1p_expr": 4.2255,
      "detect_fraction": 0.9955
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_13",
      "rank": 5,
      "gene": "MZB1",
      "score_log1p_diff": 1.7918,
      "mean_log1p_expr": 1.7982,
      "detect_fraction": 0.8529
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_6",
      "rank": 5,
      "gene": "PTGDS",
      "score_log1p_diff": 1.79,
      "mean_log1p_expr": 2.162,
      "detect_fraction": 0.7287
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_15",
      "rank": 5,
      "gene": "MUCL1",
      "score_log1p_diff": 1.5879,
      "mean_log1p_expr": 1.6157,
      "detect_fraction": 0.5
    },
    {
      "sample_id": "BRCA-071-14-1A",
      "cluster": "cluster_11",
      "rank": 5,
      "gene": "CD3E",
      "score_log1p_diff": 1.5821,
      "mean_log1p_expr": 1.7085,
      "detect_fraction": 1
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
