{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "BRCA-071-15-1A",
  "donor_id": "BRCA-071-15-1A",
  "summary": {
    "sample_id": "BRCA-071-15-1A",
    "donor_id": "BRCA-071-15-1A",
    "cancer_type": "BRCA",
    "health_status": "Breast Cancer; Normal",
    "tissue_or_cell_source": "Normal",
    "cells_in_umap_file": 6610,
    "cells_analyzed": 1999,
    "clusters": 17,
    "genes_read": 26465,
    "genes_nonzero_in_analyzed_cells": 24563,
    "mean_umi": 6600,
    "mean_genes": 2263,
    "mean_pct_mito": 4.096,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=BRCA-071-15-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/BRCA-071-15-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-15-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-15-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/BRCA-071-15-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "cells": 310,
      "mean_umi": 6308.3645,
      "median_genes": 2380.5,
      "mean_pct_mito": 2.9162
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "cells": 303,
      "mean_umi": 8276.9769,
      "median_genes": 2826,
      "mean_pct_mito": 2.7615
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "cells": 254,
      "mean_umi": 5330.5866,
      "median_genes": 2205,
      "mean_pct_mito": 3.8882
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "cells": 223,
      "mean_umi": 2642.9865,
      "median_genes": 1141,
      "mean_pct_mito": 3.8922
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "cells": 203,
      "mean_umi": 5153.1084,
      "median_genes": 2137,
      "mean_pct_mito": 3.6344
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "cells": 164,
      "mean_umi": 12814.2988,
      "median_genes": 3037,
      "mean_pct_mito": 7.3912
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "cells": 147,
      "mean_umi": 2590.9184,
      "median_genes": 1216,
      "mean_pct_mito": 5.0899
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "cells": 128,
      "mean_umi": 9491.1641,
      "median_genes": 3272,
      "mean_pct_mito": 4.9063
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "cells": 81,
      "mean_umi": 9485.5185,
      "median_genes": 2328,
      "mean_pct_mito": 5.4822
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "cells": 46,
      "mean_umi": 13101.8696,
      "median_genes": 2388.5,
      "mean_pct_mito": 3.4549
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "cells": 43,
      "mean_umi": 4789.1628,
      "median_genes": 1705,
      "mean_pct_mito": 5.2864
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "cells": 38,
      "mean_umi": 5663.4211,
      "median_genes": 2169.5,
      "mean_pct_mito": 4.6179
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "cells": 25,
      "mean_umi": 3052.36,
      "median_genes": 1356,
      "mean_pct_mito": 4.1011
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "cells": 11,
      "mean_umi": 3083.8182,
      "median_genes": 1218,
      "mean_pct_mito": 4.7998
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "cells": 8,
      "mean_umi": 8445.875,
      "median_genes": 2795.5,
      "mean_pct_mito": 2.8959
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "cells": 8,
      "mean_umi": 6200,
      "median_genes": 2516,
      "mean_pct_mito": 3.9994
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "cells": 7,
      "mean_umi": 3468.7143,
      "median_genes": 959,
      "mean_pct_mito": 7.0262
    }
  ],
  "program_scores": [
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.0719
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7564
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.4784
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.164
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1392
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1247
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1175
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0861
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0691
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0613
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0325
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0306
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0286
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0252
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0251
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0222
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0201
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1488
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0787
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0664
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0505
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0464
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0328
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0274
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0217
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0217
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0213
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0179
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0119
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0099
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0093
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0077
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.006
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 1.2125
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.9569
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1122
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1056
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0939
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0827
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0735
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0723
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0458
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0457
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0428
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0332
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.018
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0119
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0105
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0062
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 1.798
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 1.5309
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 1.1213
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.2702
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.1246
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.1191
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.1146
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0781
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0719
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0709
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0695
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0651
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.065
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0605
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0516
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0497
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0451
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.4048
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.1587
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.0517
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.0029
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.6779
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.9947
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.795
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.6236
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.4272
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.296
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.2575
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1707
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1293
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0555
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0529
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0482
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0315
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.0048
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2574
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2124
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1277
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1158
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0607
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.038
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0277
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0096
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.006
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0049
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0042
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0036
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0023
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0021
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1821
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1006
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0929
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0786
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0783
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0758
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0747
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0731
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0659
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0628
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0584
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0515
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0462
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.033
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.026
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0184
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.009
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.3167
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.6329
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.3298
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.3052
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.1814
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0454
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0301
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0172
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0161
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0121
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0078
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0055
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0047
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0046
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0016
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    }
  ],
  "program_summary": [
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 17,
      "mean_score": 0.834,
      "max_score": 2.4048,
      "mean_genes_used": 8
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 17,
      "mean_score": 0.3356,
      "max_score": 1.798,
      "mean_genes_used": 8
    },
    {
      "program": "B_plasma",
      "cluster_count": 17,
      "mean_score": 0.1913,
      "max_score": 1.0719,
      "mean_genes_used": 8
    },
    {
      "program": "Endothelial",
      "cluster_count": 17,
      "mean_score": 0.172,
      "max_score": 1.2125,
      "mean_genes_used": 7
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 17,
      "mean_score": 0.1712,
      "max_score": 1.3167,
      "mean_genes_used": 10
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 17,
      "mean_score": 0.1104,
      "max_score": 1.0048,
      "mean_genes_used": 9
    },
    {
      "program": "Proliferation",
      "cluster_count": 17,
      "mean_score": 0.0663,
      "max_score": 0.1821,
      "mean_genes_used": 7
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 17,
      "mean_score": 0.034,
      "max_score": 0.1488,
      "mean_genes_used": 8
    }
  ],
  "top_markers": [
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "SCGB2A2",
      "score_log1p_diff": 4.5836,
      "mean_log1p_expr": 4.9845,
      "detect_fraction": 0.9878
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "CD74",
      "score_log1p_diff": 4.2277,
      "mean_log1p_expr": 4.678,
      "detect_fraction": 0.9783
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "CCL21",
      "score_log1p_diff": 3.955,
      "mean_log1p_expr": 3.9852,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "AZGP1",
      "score_log1p_diff": 3.0003,
      "mean_log1p_expr": 3.5948,
      "detect_fraction": 0.9922
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "CD74",
      "score_log1p_diff": 2.8768,
      "mean_log1p_expr": 3.3696,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "CD74",
      "score_log1p_diff": 2.8458,
      "mean_log1p_expr": 3.3777,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "NKG7",
      "score_log1p_diff": 2.8224,
      "mean_log1p_expr": 2.9251,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "APOD",
      "score_log1p_diff": 2.7845,
      "mean_log1p_expr": 3.9814,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "IGFBP7",
      "score_log1p_diff": 2.5017,
      "mean_log1p_expr": 3.5041,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 2.1546,
      "mean_log1p_expr": 3.9086,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 2.1348,
      "mean_log1p_expr": 2.3248,
      "detect_fraction": 0.9932
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "IL7R",
      "score_log1p_diff": 2.0751,
      "mean_log1p_expr": 2.2278,
      "detect_fraction": 0.9596
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 2.0048,
      "mean_log1p_expr": 3.7744,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "KRT15",
      "score_log1p_diff": 1.8415,
      "mean_log1p_expr": 2.2346,
      "detect_fraction": 0.9259
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "LUM",
      "score_log1p_diff": 1.7394,
      "mean_log1p_expr": 3.4184,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 1.6036,
      "mean_log1p_expr": 3.4804,
      "detect_fraction": 0.9882
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "MT2A",
      "score_log1p_diff": 1.5856,
      "mean_log1p_expr": 2.6288,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.3578,
      "mean_log1p_expr": 3.4616,
      "detect_fraction": 0.7609
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "PTN",
      "score_log1p_diff": 3.3325,
      "mean_log1p_expr": 3.626,
      "detect_fraction": 0.9939
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "ANKRD30A",
      "score_log1p_diff": 2.7591,
      "mean_log1p_expr": 2.8156,
      "detect_fraction": 0.9453
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "TFF3",
      "score_log1p_diff": 2.7109,
      "mean_log1p_expr": 2.99,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "GNLY",
      "score_log1p_diff": 2.5784,
      "mean_log1p_expr": 2.6408,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "ACTA2",
      "score_log1p_diff": 2.2623,
      "mean_log1p_expr": 2.4521,
      "detect_fraction": 0.8372
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "CCL14",
      "score_log1p_diff": 2.2319,
      "mean_log1p_expr": 2.2481,
      "detect_fraction": 0.8684
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.1474,
      "mean_log1p_expr": 2.3167,
      "detect_fraction": 0.9091
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "COL1A1",
      "score_log1p_diff": 2.0221,
      "mean_log1p_expr": 3.1426,
      "detect_fraction": 0.9967
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "SRGN",
      "score_log1p_diff": 2.0108,
      "mean_log1p_expr": 2.5004,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "SRGN",
      "score_log1p_diff": 2.0056,
      "mean_log1p_expr": 2.4194,
      "detect_fraction": 0.9641
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "FOS",
      "score_log1p_diff": 1.8231,
      "mean_log1p_expr": 3.955,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "DCN",
      "score_log1p_diff": 1.7301,
      "mean_log1p_expr": 3.8037,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "KRT19",
      "score_log1p_diff": 1.6748,
      "mean_log1p_expr": 2.2163,
      "detect_fraction": 0.8889
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "PTGDS",
      "score_log1p_diff": 1.4847,
      "mean_log1p_expr": 1.9163,
      "detect_fraction": 0.8621
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "MT1X",
      "score_log1p_diff": 1.4814,
      "mean_log1p_expr": 1.8365,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "LUM",
      "score_log1p_diff": 1.308,
      "mean_log1p_expr": 2.8278,
      "detect_fraction": 0.9488
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "MGP",
      "score_log1p_diff": 3.1662,
      "mean_log1p_expr": 5.9302,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "HLA-DPA1",
      "score_log1p_diff": 3.018,
      "mean_log1p_expr": 3.1095,
      "detect_fraction": 0.8696
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "KRT18",
      "score_log1p_diff": 2.3777,
      "mean_log1p_expr": 2.7521,
      "detect_fraction": 0.9922
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "IGFBP7",
      "score_log1p_diff": 2.2734,
      "mean_log1p_expr": 3.3204,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "TAGLN",
      "score_log1p_diff": 2.2339,
      "mean_log1p_expr": 3.0261,
      "detect_fraction": 0.9302
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "ACKR1",
      "score_log1p_diff": 2.0988,
      "mean_log1p_expr": 2.1024,
      "detect_fraction": 0.7105
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "GZMB",
      "score_log1p_diff": 1.9948,
      "mean_log1p_expr": 2.0494,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "LUM",
      "score_log1p_diff": 1.9711,
      "mean_log1p_expr": 3.3583,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 1.8147,
      "mean_log1p_expr": 1.9937,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "LUM",
      "score_log1p_diff": 1.7886,
      "mean_log1p_expr": 3.1972,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "IL7R",
      "score_log1p_diff": 1.6296,
      "mean_log1p_expr": 2.0073,
      "detect_fraction": 0.875
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "SFRP1",
      "score_log1p_diff": 1.5852,
      "mean_log1p_expr": 2.2959,
      "detect_fraction": 0.9383
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "DCN",
      "score_log1p_diff": 1.36,
      "mean_log1p_expr": 3.3025,
      "detect_fraction": 0.9901
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "HLA-B",
      "score_log1p_diff": 1.2615,
      "mean_log1p_expr": 2.4078,
      "detect_fraction": 0.9932
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "COL1A2",
      "score_log1p_diff": 1.2304,
      "mean_log1p_expr": 2.5539,
      "detect_fraction": 0.9685
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "TSC22D3",
      "score_log1p_diff": 1.1862,
      "mean_log1p_expr": 1.8727,
      "detect_fraction": 0.9641
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "FBXO32",
      "score_log1p_diff": 1.1596,
      "mean_log1p_expr": 1.4031,
      "detect_fraction": 0.8571
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "KRT15",
      "score_log1p_diff": 3.1366,
      "mean_log1p_expr": 3.3469,
      "detect_fraction": 0.9878
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "SRGN",
      "score_log1p_diff": 2.7076,
      "mean_log1p_expr": 3.2828,
      "detect_fraction": 0.9348
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "AREG",
      "score_log1p_diff": 2.3724,
      "mean_log1p_expr": 2.8016,
      "detect_fraction": 0.8984
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "CAVIN2",
      "score_log1p_diff": 2.2261,
      "mean_log1p_expr": 2.2648,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "MYL9",
      "score_log1p_diff": 2.1252,
      "mean_log1p_expr": 2.865,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "SPARCL1",
      "score_log1p_diff": 1.976,
      "mean_log1p_expr": 2.6729,
      "detect_fraction": 0.9737
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "APOE",
      "score_log1p_diff": 1.9444,
      "mean_log1p_expr": 3.4834,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "CST7",
      "score_log1p_diff": 1.8481,
      "mean_log1p_expr": 2.0022,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "HSPA1A",
      "score_log1p_diff": 1.753,
      "mean_log1p_expr": 2.609,
      "detect_fraction": 0.971
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "rank": 4,
      "gene": "CD83",
      "score_log1p_diff": 1.7416,
      "mean_log1p_expr": 1.8719,
      "detect_fraction": 0.9091
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "SLPI",
      "score_log1p_diff": 1.5765,
      "mean_log1p_expr": 1.7786,
      "detect_fraction": 0.7901
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "rank": 4,
      "gene": "SRGN",
      "score_log1p_diff": 1.5072,
      "mean_log1p_expr": 2.1387,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "IL32",
      "score_log1p_diff": 1.2224,
      "mean_log1p_expr": 1.4804,
      "detect_fraction": 0.9252
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "APOE",
      "score_log1p_diff": 1.2177,
      "mean_log1p_expr": 2.8968,
      "detect_fraction": 0.9646
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "CXCR4",
      "score_log1p_diff": 1.1583,
      "mean_log1p_expr": 1.3705,
      "detect_fraction": 0.9238
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "ACTA2",
      "score_log1p_diff": 1.1135,
      "mean_log1p_expr": 1.3481,
      "detect_fraction": 0.7143
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "ITM2A",
      "score_log1p_diff": 0.9926,
      "mean_log1p_expr": 1.6086,
      "detect_fraction": 0.9163
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_6",
      "rank": 5,
      "gene": "SFRP1",
      "score_log1p_diff": 2.8049,
      "mean_log1p_expr": 3.3496,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_10",
      "rank": 5,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 2.7033,
      "mean_log1p_expr": 2.8301,
      "detect_fraction": 0.7609
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_8",
      "rank": 5,
      "gene": "XBP1",
      "score_log1p_diff": 2.3049,
      "mean_log1p_expr": 2.8316,
      "detect_fraction": 0.9609
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_16",
      "rank": 5,
      "gene": "MMRN1",
      "score_log1p_diff": 2.1311,
      "mean_log1p_expr": 2.1373,
      "detect_fraction": 0.875
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_12",
      "rank": 5,
      "gene": "IGFBP7",
      "score_log1p_diff": 1.9135,
      "mean_log1p_expr": 2.9333,
      "detect_fraction": 0.9474
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_2",
      "rank": 5,
      "gene": "COL3A1",
      "score_log1p_diff": 1.8967,
      "mean_log1p_expr": 3.0268,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_11",
      "rank": 5,
      "gene": "ADIRF",
      "score_log1p_diff": 1.8523,
      "mean_log1p_expr": 2.251,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_1",
      "rank": 5,
      "gene": "APOE",
      "score_log1p_diff": 1.7166,
      "mean_log1p_expr": 3.2842,
      "detect_fraction": 0.9968
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_13",
      "rank": 5,
      "gene": "CCL5",
      "score_log1p_diff": 1.703,
      "mean_log1p_expr": 2.0286,
      "detect_fraction": 0.96
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_9",
      "rank": 5,
      "gene": "LTF",
      "score_log1p_diff": 1.4803,
      "mean_log1p_expr": 1.6406,
      "detect_fraction": 0.6667
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_14",
      "rank": 5,
      "gene": "CD69",
      "score_log1p_diff": 1.4635,
      "mean_log1p_expr": 1.6108,
      "detect_fraction": 0.9091
    },
    {
      "sample_id": "BRCA-071-15-1A",
      "cluster": "cluster_15",
      "rank": 5,
      "gene": "HTRA1",
      "score_log1p_diff": 1.4158,
      "mean_log1p_expr": 2.7628,
      "detect_fraction": 1
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
