{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "BRCA-071-16-1A",
  "donor_id": "BRCA-071-16-1A",
  "summary": {
    "sample_id": "BRCA-071-16-1A",
    "donor_id": "BRCA-071-16-1A",
    "cancer_type": "BRCA",
    "health_status": "Breast Cancer; Normal",
    "tissue_or_cell_source": "Normal",
    "cells_in_umap_file": 3514,
    "cells_analyzed": 1998,
    "clusters": 19,
    "genes_read": 24655,
    "genes_nonzero_in_analyzed_cells": 23362,
    "mean_umi": 7255,
    "mean_genes": 2094,
    "mean_pct_mito": 4.129,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=BRCA-071-16-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/BRCA-071-16-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-16-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-16-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/BRCA-071-16-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "cells": 376,
      "mean_umi": 5321.2021,
      "median_genes": 1778,
      "mean_pct_mito": 3.3799
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "cells": 303,
      "mean_umi": 3616.0528,
      "median_genes": 1457,
      "mean_pct_mito": 4.2246
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "cells": 189,
      "mean_umi": 4960.0741,
      "median_genes": 1691,
      "mean_pct_mito": 5.0788
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "cells": 185,
      "mean_umi": 10343.7622,
      "median_genes": 3087,
      "mean_pct_mito": 4.7551
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "cells": 166,
      "mean_umi": 5278.506,
      "median_genes": 1766.5,
      "mean_pct_mito": 3.558
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "cells": 122,
      "mean_umi": 4775.8361,
      "median_genes": 1747.5,
      "mean_pct_mito": 3.8122
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "cells": 109,
      "mean_umi": 14781.6881,
      "median_genes": 3162,
      "mean_pct_mito": 3.9498
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "cells": 92,
      "mean_umi": 4499.337,
      "median_genes": 1739.5,
      "mean_pct_mito": 4.4324
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "cells": 90,
      "mean_umi": 10564.2,
      "median_genes": 2886.5,
      "mean_pct_mito": 4.4258
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "cells": 59,
      "mean_umi": 7563.0678,
      "median_genes": 2483,
      "mean_pct_mito": 3.4597
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "cells": 55,
      "mean_umi": 27505.6545,
      "median_genes": 2582,
      "mean_pct_mito": 1.7461
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "cells": 44,
      "mean_umi": 8396.0227,
      "median_genes": 2487.5,
      "mean_pct_mito": 6.3521
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "cells": 42,
      "mean_umi": 14566.5476,
      "median_genes": 3468.5,
      "mean_pct_mito": 5.9583
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "cells": 41,
      "mean_umi": 4789.3659,
      "median_genes": 1860,
      "mean_pct_mito": 4.8066
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "cells": 38,
      "mean_umi": 14329.1842,
      "median_genes": 4010,
      "mean_pct_mito": 3.8649
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "cells": 36,
      "mean_umi": 2979.1111,
      "median_genes": 781.5,
      "mean_pct_mito": 4.6014
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "cells": 28,
      "mean_umi": 1838.9286,
      "median_genes": 541,
      "mean_pct_mito": 5.5707
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "cells": 15,
      "mean_umi": 10463.2,
      "median_genes": 3052,
      "mean_pct_mito": 2.5516
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "cells": 8,
      "mean_umi": 14488.375,
      "median_genes": 3853,
      "mean_pct_mito": 4.1009
    }
  ],
  "program_scores": [
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 2.4914
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.5667
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.5593
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.1393
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7682
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.6009
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.4459
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3098
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2827
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2671
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2569
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2134
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1796
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1488
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.074
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.063
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0396
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0287
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0235
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.4007
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.382
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.2141
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.168
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1603
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1282
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1045
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0786
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0553
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0494
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0492
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0309
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0299
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0257
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0218
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0189
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0173
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.012
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0068
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.7544
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.2684
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1998
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.157
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1519
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1518
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.111
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1024
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0387
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0371
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.03
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0226
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0222
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0099
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0095
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0072
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0042
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0038
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0035
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 1.7472
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.8566
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.1261
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0411
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.028
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0208
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0207
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0183
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0177
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0148
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0125
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0124
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0123
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0121
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0115
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0106
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0066
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0059
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0023
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 3.1719
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.263
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.1912
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.2127
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1312
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0388
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0351
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0217
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0192
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0151
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0149
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0137
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0111
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0111
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0105
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0095
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.008
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0063
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.7692
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.3378
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4544
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.439
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3662
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3589
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1789
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1303
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1126
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0779
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0626
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0381
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.036
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0344
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0174
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0144
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.011
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0061
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 1.5517
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1978
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1002
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0831
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0636
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0565
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0503
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0495
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0454
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0451
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0446
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.044
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.038
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0363
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0359
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0297
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0183
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0172
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0165
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.3081
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.6889
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.5959
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4607
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4333
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.3966
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.3953
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.072
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0704
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0585
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0526
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0281
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0231
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0219
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0218
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0133
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0058
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.005
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0047
    }
  ],
  "program_summary": [
    {
      "program": "B_plasma",
      "cluster_count": 19,
      "mean_score": 0.5505,
      "max_score": 2.4914,
      "mean_genes_used": 8
    },
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 19,
      "mean_score": 0.3782,
      "max_score": 3.1719,
      "mean_genes_used": 8
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 19,
      "mean_score": 0.2866,
      "max_score": 1.7692,
      "mean_genes_used": 9
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 19,
      "mean_score": 0.2451,
      "max_score": 1.3081,
      "mean_genes_used": 10
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 19,
      "mean_score": 0.1567,
      "max_score": 1.7472,
      "mean_genes_used": 8
    },
    {
      "program": "Proliferation",
      "cluster_count": 19,
      "mean_score": 0.1328,
      "max_score": 1.5517,
      "mean_genes_used": 7
    },
    {
      "program": "Endothelial",
      "cluster_count": 19,
      "mean_score": 0.1098,
      "max_score": 0.7544,
      "mean_genes_used": 7
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 19,
      "mean_score": 0.1028,
      "max_score": 0.4007,
      "mean_genes_used": 8
    }
  ],
  "top_markers": [
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "MGP",
      "score_log1p_diff": 5.1803,
      "mean_log1p_expr": 6.0786,
      "detect_fraction": 0.9762
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "JCHAIN",
      "score_log1p_diff": 4.664,
      "mean_log1p_expr": 4.7278,
      "detect_fraction": 0.8
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 4.4739,
      "mean_log1p_expr": 4.9045,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "CST3",
      "score_log1p_diff": 4.3795,
      "mean_log1p_expr": 5.1414,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 4.1232,
      "mean_log1p_expr": 4.2571,
      "detect_fraction": 0.9838
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "TAGLN",
      "score_log1p_diff": 3.8581,
      "mean_log1p_expr": 4.0841,
      "detect_fraction": 0.9773
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "rank": 1,
      "gene": "GZMB",
      "score_log1p_diff": 3.6722,
      "mean_log1p_expr": 3.7686,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "CST3",
      "score_log1p_diff": 3.0587,
      "mean_log1p_expr": 3.9217,
      "detect_fraction": 0.9778
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "IGHV1-2",
      "score_log1p_diff": 2.9263,
      "mean_log1p_expr": 2.9402,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "GNLY",
      "score_log1p_diff": 2.8137,
      "mean_log1p_expr": 2.85,
      "detect_fraction": 0.8804
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "rank": 1,
      "gene": "STMN1",
      "score_log1p_diff": 2.6246,
      "mean_log1p_expr": 2.8012,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "CD74",
      "score_log1p_diff": 2.4733,
      "mean_log1p_expr": 4.4083,
      "detect_fraction": 0.9947
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "AZGP1",
      "score_log1p_diff": 2.3604,
      "mean_log1p_expr": 2.4667,
      "detect_fraction": 0.8814
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 1.9896,
      "mean_log1p_expr": 2.3045,
      "detect_fraction": 0.9076
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "TPSAB1",
      "score_log1p_diff": 1.9106,
      "mean_log1p_expr": 1.9175,
      "detect_fraction": 0.9286
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "FABP4",
      "score_log1p_diff": 1.8916,
      "mean_log1p_expr": 1.94,
      "detect_fraction": 0.8056
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "IL7R",
      "score_log1p_diff": 1.747,
      "mean_log1p_expr": 2.344,
      "detect_fraction": 0.9787
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "IL32",
      "score_log1p_diff": 1.743,
      "mean_log1p_expr": 2.8165,
      "detect_fraction": 0.9836
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "IL32",
      "score_log1p_diff": 1.1581,
      "mean_log1p_expr": 2.2418,
      "detect_fraction": 0.9699
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "SCGB2A2",
      "score_log1p_diff": 4.3405,
      "mean_log1p_expr": 4.4527,
      "detect_fraction": 0.8571
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "COL1A1",
      "score_log1p_diff": 4.3298,
      "mean_log1p_expr": 4.5787,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 4.2222,
      "mean_log1p_expr": 5.0128,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "IGHA1",
      "score_log1p_diff": 4.0727,
      "mean_log1p_expr": 4.1555,
      "detect_fraction": 0.8
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "MGP",
      "score_log1p_diff": 4.0623,
      "mean_log1p_expr": 4.6934,
      "detect_fraction": 0.9946
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.7516,
      "mean_log1p_expr": 4.1029,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 3.3472,
      "mean_log1p_expr": 5.4911,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "IGKV3-20",
      "score_log1p_diff": 2.8841,
      "mean_log1p_expr": 2.9845,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.8052,
      "mean_log1p_expr": 3.6997,
      "detect_fraction": 0.9667
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "NKG7",
      "score_log1p_diff": 2.4619,
      "mean_log1p_expr": 2.7017,
      "detect_fraction": 0.9783
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.3554,
      "mean_log1p_expr": 3.1535,
      "detect_fraction": 0.9788
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "rank": 2,
      "gene": "TUBA1B",
      "score_log1p_diff": 2.3447,
      "mean_log1p_expr": 3.0539,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "ANKRD30A",
      "score_log1p_diff": 1.9628,
      "mean_log1p_expr": 1.9999,
      "detect_fraction": 0.6102
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "TPSB2",
      "score_log1p_diff": 1.6528,
      "mean_log1p_expr": 1.6565,
      "detect_fraction": 0.8214
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "GZMK",
      "score_log1p_diff": 1.5727,
      "mean_log1p_expr": 1.6835,
      "detect_fraction": 0.8185
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "SPARCL1",
      "score_log1p_diff": 1.4974,
      "mean_log1p_expr": 1.7376,
      "detect_fraction": 0.8333
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "IL7R",
      "score_log1p_diff": 1.073,
      "mean_log1p_expr": 1.9096,
      "detect_fraction": 0.8976
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "LTB",
      "score_log1p_diff": 1.0218,
      "mean_log1p_expr": 1.7773,
      "detect_fraction": 0.8852
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "CD3E",
      "score_log1p_diff": 0.9275,
      "mean_log1p_expr": 1.4547,
      "detect_fraction": 0.9654
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "CFD",
      "score_log1p_diff": 4.3231,
      "mean_log1p_expr": 4.8109,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "CD74",
      "score_log1p_diff": 4.0567,
      "mean_log1p_expr": 6.0044,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "IGKC",
      "score_log1p_diff": 3.8584,
      "mean_log1p_expr": 3.9791,
      "detect_fraction": 0.7455
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "CFD",
      "score_log1p_diff": 3.6994,
      "mean_log1p_expr": 3.9268,
      "detect_fraction": 0.9027
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "MYL9",
      "score_log1p_diff": 3.5337,
      "mean_log1p_expr": 3.7383,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "PTN",
      "score_log1p_diff": 3.3967,
      "mean_log1p_expr": 3.4526,
      "detect_fraction": 0.9524
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "rank": 3,
      "gene": "IRF4",
      "score_log1p_diff": 2.8964,
      "mean_log1p_expr": 3.0235,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "TYROBP",
      "score_log1p_diff": 2.7907,
      "mean_log1p_expr": 3.0762,
      "detect_fraction": 0.9778
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "IGKC",
      "score_log1p_diff": 2.7041,
      "mean_log1p_expr": 2.8755,
      "detect_fraction": 0.9756
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "rank": 3,
      "gene": "TYMS",
      "score_log1p_diff": 2.3325,
      "mean_log1p_expr": 2.3495,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 1.8131,
      "mean_log1p_expr": 2.7387,
      "detect_fraction": 0.9788
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "KRT18",
      "score_log1p_diff": 1.7127,
      "mean_log1p_expr": 1.7844,
      "detect_fraction": 0.8814
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "CCL5",
      "score_log1p_diff": 1.6875,
      "mean_log1p_expr": 2.2265,
      "detect_fraction": 0.8804
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "CCL4",
      "score_log1p_diff": 1.4762,
      "mean_log1p_expr": 1.7966,
      "detect_fraction": 0.802
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "IFITM3",
      "score_log1p_diff": 1.3902,
      "mean_log1p_expr": 2.0894,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "HPGD",
      "score_log1p_diff": 1.3633,
      "mean_log1p_expr": 1.4611,
      "detect_fraction": 0.8571
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "CTLA4",
      "score_log1p_diff": 0.9474,
      "mean_log1p_expr": 1.0577,
      "detect_fraction": 0.8197
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "LTB",
      "score_log1p_diff": 0.8821,
      "mean_log1p_expr": 1.534,
      "detect_fraction": 0.8803
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "LTB",
      "score_log1p_diff": 0.8558,
      "mean_log1p_expr": 1.6026,
      "detect_fraction": 0.8735
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "rank": 4,
      "gene": "COL1A2",
      "score_log1p_diff": 4.2562,
      "mean_log1p_expr": 4.5748,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "HLA-DPB1",
      "score_log1p_diff": 3.9252,
      "mean_log1p_expr": 4.723,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "MZB1",
      "score_log1p_diff": 3.6037,
      "mean_log1p_expr": 3.6439,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "GSN",
      "score_log1p_diff": 3.5842,
      "mean_log1p_expr": 3.9855,
      "detect_fraction": 0.9946
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "ACTA2",
      "score_log1p_diff": 3.5047,
      "mean_log1p_expr": 3.5865,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "SFRP1",
      "score_log1p_diff": 2.9933,
      "mean_log1p_expr": 3.1374,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_18",
      "rank": 4,
      "gene": "TCL1A",
      "score_log1p_diff": 2.8709,
      "mean_log1p_expr": 2.9043,
      "detect_fraction": 0.9333
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "CD74",
      "score_log1p_diff": 2.6359,
      "mean_log1p_expr": 4.6862,
      "detect_fraction": 0.9889
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_14",
      "rank": 4,
      "gene": "CD74",
      "score_log1p_diff": 2.2967,
      "mean_log1p_expr": 4.4187,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_19",
      "rank": 4,
      "gene": "GAPDH",
      "score_log1p_diff": 2.2629,
      "mean_log1p_expr": 4.1392,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "CD79A",
      "score_log1p_diff": 1.7314,
      "mean_log1p_expr": 1.8562,
      "detect_fraction": 0.9577
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "KRT19",
      "score_log1p_diff": 1.6951,
      "mean_log1p_expr": 1.7824,
      "detect_fraction": 0.7627
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "CTSW",
      "score_log1p_diff": 1.5123,
      "mean_log1p_expr": 1.7931,
      "detect_fraction": 0.9891
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "CLDN5",
      "score_log1p_diff": 1.3353,
      "mean_log1p_expr": 1.34,
      "detect_fraction": 0.75
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "CST7",
      "score_log1p_diff": 1.1663,
      "mean_log1p_expr": 1.5314,
      "detect_fraction": 0.8746
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "TPSD1",
      "score_log1p_diff": 1.023,
      "mean_log1p_expr": 1.026,
      "detect_fraction": 0.6071
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "BATF",
      "score_log1p_diff": 0.9444,
      "mean_log1p_expr": 1.1838,
      "detect_fraction": 0.7869
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "ZFP36L2",
      "score_log1p_diff": 0.8423,
      "mean_log1p_expr": 2.9062,
      "detect_fraction": 0.9761
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "CD52",
      "score_log1p_diff": 0.8375,
      "mean_log1p_expr": 2.0475,
      "detect_fraction": 0.988
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_15",
      "rank": 5,
      "gene": "MGP",
      "score_log1p_diff": 4.1621,
      "mean_log1p_expr": 5.0902,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_7",
      "rank": 5,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 3.8745,
      "mean_log1p_expr": 4.7602,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_11",
      "rank": 5,
      "gene": "SSR4",
      "score_log1p_diff": 3.4088,
      "mean_log1p_expr": 4.3319,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-16-1A",
      "cluster": "cluster_4",
      "rank": 5,
      "gene": "APOD",
      "score_log1p_diff": 3.3682,
      "mean_log1p_expr": 3.453,
      "detect_fraction": 0.9568
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
