{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "BRCA-071-17-1A",
  "donor_id": "BRCA-071-17-1A",
  "summary": {
    "sample_id": "BRCA-071-17-1A",
    "donor_id": "BRCA-071-17-1A",
    "cancer_type": "BRCA",
    "health_status": "Breast Cancer; Normal",
    "tissue_or_cell_source": "Normal",
    "cells_in_umap_file": 1725,
    "cells_analyzed": 1725,
    "clusters": 17,
    "genes_read": 22714,
    "genes_nonzero_in_analyzed_cells": 22538,
    "mean_umi": 8439,
    "mean_genes": 2482,
    "mean_pct_mito": 3.391,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=BRCA-071-17-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/BRCA-071-17-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-17-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/BRCA-071-17-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/BRCA-071-17-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "cells": 240,
      "mean_umi": 5346.5875,
      "median_genes": 1811.5,
      "mean_pct_mito": 2.692
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "cells": 235,
      "mean_umi": 4671.1532,
      "median_genes": 1798,
      "mean_pct_mito": 3.1032
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "cells": 219,
      "mean_umi": 10288.5297,
      "median_genes": 2934,
      "mean_pct_mito": 5.4119
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "cells": 152,
      "mean_umi": 8253.0987,
      "median_genes": 2784.5,
      "mean_pct_mito": 3.044
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "cells": 145,
      "mean_umi": 14153.4276,
      "median_genes": 3954,
      "mean_pct_mito": 2.5479
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "cells": 140,
      "mean_umi": 6911.2786,
      "median_genes": 2625,
      "mean_pct_mito": 3.1785
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "cells": 131,
      "mean_umi": 13054.916,
      "median_genes": 3070,
      "mean_pct_mito": 3.1326
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "cells": 91,
      "mean_umi": 5235.4945,
      "median_genes": 2139,
      "mean_pct_mito": 2.8372
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "cells": 80,
      "mean_umi": 7515.2375,
      "median_genes": 2409.5,
      "mean_pct_mito": 4.2188
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "cells": 71,
      "mean_umi": 11291.9859,
      "median_genes": 3860,
      "mean_pct_mito": 4.3134
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "cells": 52,
      "mean_umi": 2412.2692,
      "median_genes": 1065,
      "mean_pct_mito": 4.321
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "cells": 40,
      "mean_umi": 13872.85,
      "median_genes": 3649.5,
      "mean_pct_mito": 3.0253
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "cells": 30,
      "mean_umi": 6020.7667,
      "median_genes": 1982,
      "mean_pct_mito": 3.3245
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "cells": 29,
      "mean_umi": 5404.4138,
      "median_genes": 2119,
      "mean_pct_mito": 2.6405
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "cells": 26,
      "mean_umi": 27938,
      "median_genes": 2715.5,
      "mean_pct_mito": 0.9319
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "cells": 23,
      "mean_umi": 6660.1304,
      "median_genes": 1986,
      "mean_pct_mito": 3.0294
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "cells": 21,
      "mean_umi": 7743.1905,
      "median_genes": 2805,
      "mean_pct_mito": 3.9685
    }
  ],
  "program_scores": [
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 2.4078
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.3012
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7459
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.6839
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3443
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3255
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2687
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2588
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2556
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1822
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1657
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1497
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1464
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1451
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1155
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.104
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0271
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.4366
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.205
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1322
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1283
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1198
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1071
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0655
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.055
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0466
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0385
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0373
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0307
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0226
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.018
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.014
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0104
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0072
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 1.164
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.2477
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1763
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1683
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1506
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1442
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1154
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.111
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0818
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.057
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0299
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0285
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0263
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0124
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0086
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.004
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0034
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 1.4725
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 1.4501
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0392
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0388
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0361
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0327
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0248
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0218
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.02
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0172
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.016
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0152
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0145
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0127
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0124
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.012
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0067
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.7871
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.9167
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.868
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.5749
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.1565
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1554
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0723
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0388
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0363
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0349
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0329
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0276
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0257
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0253
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.023
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0217
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0188
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.9548
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.677
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4312
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1702
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1539
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1432
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0522
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.05
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0293
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.027
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0244
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.022
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0205
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.02
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0195
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0098
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0054
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1872
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1188
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0966
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0866
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0658
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0557
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0549
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.053
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0522
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0478
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0477
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0475
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0438
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0427
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0371
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.033
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0213
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.5137
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.8031
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4973
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.422
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.2684
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0899
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0663
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0597
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0481
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0265
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0259
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0193
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0155
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0118
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0097
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0064
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.006
    }
  ],
  "program_summary": [
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 17,
      "mean_score": 0.5774,
      "max_score": 2.7871,
      "mean_genes_used": 8
    },
    {
      "program": "B_plasma",
      "cluster_count": 17,
      "mean_score": 0.4487,
      "max_score": 2.4078,
      "mean_genes_used": 8
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 17,
      "mean_score": 0.283,
      "max_score": 1.9548,
      "mean_genes_used": 9
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 17,
      "mean_score": 0.2288,
      "max_score": 1.5137,
      "mean_genes_used": 10
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 17,
      "mean_score": 0.1907,
      "max_score": 1.4725,
      "mean_genes_used": 8
    },
    {
      "program": "Endothelial",
      "cluster_count": 17,
      "mean_score": 0.1488,
      "max_score": 1.164,
      "mean_genes_used": 7
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 17,
      "mean_score": 0.0867,
      "max_score": 0.4366,
      "mean_genes_used": 8
    },
    {
      "program": "Proliferation",
      "cluster_count": 17,
      "mean_score": 0.0642,
      "max_score": 0.1872,
      "mean_genes_used": 7
    }
  ],
  "top_markers": [
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "JCHAIN",
      "score_log1p_diff": 6.1082,
      "mean_log1p_expr": 6.1628,
      "detect_fraction": 0.9231
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 4.4436,
      "mean_log1p_expr": 5.0465,
      "detect_fraction": 0.975
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 4.2236,
      "mean_log1p_expr": 5.1206,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.7643,
      "mean_log1p_expr": 4.1844,
      "detect_fraction": 0.9695
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "TAGLN",
      "score_log1p_diff": 3.6533,
      "mean_log1p_expr": 4.151,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "APOD",
      "score_log1p_diff": 3.6025,
      "mean_log1p_expr": 4.2091,
      "detect_fraction": 0.9671
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "MGP",
      "score_log1p_diff": 3.4328,
      "mean_log1p_expr": 5.1609,
      "detect_fraction": 0.9863
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "SFRP4",
      "score_log1p_diff": 3.2207,
      "mean_log1p_expr": 3.5784,
      "detect_fraction": 0.9524
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "NKG7",
      "score_log1p_diff": 3.041,
      "mean_log1p_expr": 3.2907,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "AZGP1",
      "score_log1p_diff": 3.0054,
      "mean_log1p_expr": 3.3529,
      "detect_fraction": 0.9718
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.0042,
      "mean_log1p_expr": 3.6701,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "DCN",
      "score_log1p_diff": 2.8709,
      "mean_log1p_expr": 3.8899,
      "detect_fraction": 0.9857
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 2.4376,
      "mean_log1p_expr": 2.809,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "IL32",
      "score_log1p_diff": 2.1359,
      "mean_log1p_expr": 2.9837,
      "detect_fraction": 0.9655
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "FABP4",
      "score_log1p_diff": 1.7382,
      "mean_log1p_expr": 1.8407,
      "detect_fraction": 0.6667
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "IL7R",
      "score_log1p_diff": 1.6478,
      "mean_log1p_expr": 1.8546,
      "detect_fraction": 0.8917
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 0.7054,
      "mean_log1p_expr": 1.3875,
      "detect_fraction": 0.7308
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "IL1B",
      "score_log1p_diff": 4.2714,
      "mean_log1p_expr": 4.4903,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "IGHA1",
      "score_log1p_diff": 4.0406,
      "mean_log1p_expr": 4.0838,
      "detect_fraction": 0.7308
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "CFD",
      "score_log1p_diff": 3.742,
      "mean_log1p_expr": 4.5025,
      "detect_fraction": 0.9448
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 3.6421,
      "mean_log1p_expr": 5.0927,
      "detect_fraction": 0.9924
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "ACTA2",
      "score_log1p_diff": 3.6277,
      "mean_log1p_expr": 3.7957,
      "detect_fraction": 0.9875
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "DCN",
      "score_log1p_diff": 3.4713,
      "mean_log1p_expr": 4.4174,
      "detect_fraction": 0.9868
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "SCGB2A2",
      "score_log1p_diff": 3.2255,
      "mean_log1p_expr": 3.4163,
      "detect_fraction": 0.8447
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "MGP",
      "score_log1p_diff": 3.0444,
      "mean_log1p_expr": 5.1712,
      "detect_fraction": 0.9524
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 3.0024,
      "mean_log1p_expr": 4.6895,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "KRT19",
      "score_log1p_diff": 2.6451,
      "mean_log1p_expr": 3.0234,
      "detect_fraction": 0.9718
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "GNLY",
      "score_log1p_diff": 2.292,
      "mean_log1p_expr": 2.3576,
      "detect_fraction": 0.7473
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "SFRP2",
      "score_log1p_diff": 2.2081,
      "mean_log1p_expr": 2.8092,
      "detect_fraction": 0.9286
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "PECAM1",
      "score_log1p_diff": 1.6283,
      "mean_log1p_expr": 1.7383,
      "detect_fraction": 0.9
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "CXCR4",
      "score_log1p_diff": 1.4819,
      "mean_log1p_expr": 2.0265,
      "detect_fraction": 0.8596
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "SRGN",
      "score_log1p_diff": 1.4761,
      "mean_log1p_expr": 2.7374,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "SRGN",
      "score_log1p_diff": 1.2708,
      "mean_log1p_expr": 2.3801,
      "detect_fraction": 0.9292
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "ARHGAP15",
      "score_log1p_diff": 0.6757,
      "mean_log1p_expr": 1.0204,
      "detect_fraction": 0.8077
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "CD74",
      "score_log1p_diff": 4.1803,
      "mean_log1p_expr": 5.8105,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "IGFBP6",
      "score_log1p_diff": 3.613,
      "mean_log1p_expr": 4.1571,
      "detect_fraction": 0.9862
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "IGKC",
      "score_log1p_diff": 3.6126,
      "mean_log1p_expr": 3.6659,
      "detect_fraction": 0.7308
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 3.438,
      "mean_log1p_expr": 3.9428,
      "detect_fraction": 0.9695
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "MYL9",
      "score_log1p_diff": 3.2625,
      "mean_log1p_expr": 3.7074,
      "detect_fraction": 0.9875
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "KRT15",
      "score_log1p_diff": 3.1078,
      "mean_log1p_expr": 3.1702,
      "detect_fraction": 0.9635
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "DCN",
      "score_log1p_diff": 2.8436,
      "mean_log1p_expr": 4.0609,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "GSN",
      "score_log1p_diff": 2.7768,
      "mean_log1p_expr": 4.0529,
      "detect_fraction": 0.9868
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "KRT18",
      "score_log1p_diff": 2.511,
      "mean_log1p_expr": 2.7704,
      "detect_fraction": 0.9577
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "CD83",
      "score_log1p_diff": 2.4022,
      "mean_log1p_expr": 2.9818,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "CCL5",
      "score_log1p_diff": 2.2887,
      "mean_log1p_expr": 2.8713,
      "detect_fraction": 0.978
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "GSN",
      "score_log1p_diff": 2.1962,
      "mean_log1p_expr": 3.5387,
      "detect_fraction": 0.9643
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "CLDN5",
      "score_log1p_diff": 1.6208,
      "mean_log1p_expr": 1.6241,
      "detect_fraction": 0.8667
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "DUSP4",
      "score_log1p_diff": 1.458,
      "mean_log1p_expr": 1.6913,
      "detect_fraction": 0.931
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "IL32",
      "score_log1p_diff": 1.4499,
      "mean_log1p_expr": 2.136,
      "detect_fraction": 0.9745
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "CXCR4",
      "score_log1p_diff": 1.2152,
      "mean_log1p_expr": 1.7926,
      "detect_fraction": 0.8167
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "PTPRC",
      "score_log1p_diff": 0.5675,
      "mean_log1p_expr": 1.401,
      "detect_fraction": 0.8077
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "CCL3",
      "score_log1p_diff": 4.1272,
      "mean_log1p_expr": 4.2981,
      "detect_fraction": 0.975
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "COL1A2",
      "score_log1p_diff": 3.5028,
      "mean_log1p_expr": 3.9975,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "rank": 4,
      "gene": "MZB1",
      "score_log1p_diff": 3.2682,
      "mean_log1p_expr": 3.2811,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "IFI30",
      "score_log1p_diff": 3.2178,
      "mean_log1p_expr": 3.3935,
      "detect_fraction": 0.9237
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.1973,
      "mean_log1p_expr": 3.7879,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "PTN",
      "score_log1p_diff": 2.5927,
      "mean_log1p_expr": 2.7224,
      "detect_fraction": 0.8311
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "CLU",
      "score_log1p_diff": 2.4998,
      "mean_log1p_expr": 3.5596,
      "detect_fraction": 0.9524
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "PIP",
      "score_log1p_diff": 2.3632,
      "mean_log1p_expr": 2.3905,
      "detect_fraction": 0.7183
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "LUM",
      "score_log1p_diff": 2.3482,
      "mean_log1p_expr": 2.9421,
      "detect_fraction": 0.9342
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 2.312,
      "mean_log1p_expr": 3.0471,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "CFD",
      "score_log1p_diff": 2.1657,
      "mean_log1p_expr": 3.065,
      "detect_fraction": 0.8929
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "GZMA",
      "score_log1p_diff": 1.8672,
      "mean_log1p_expr": 2.0913,
      "detect_fraction": 0.967
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "CAV1",
      "score_log1p_diff": 1.5556,
      "mean_log1p_expr": 1.9508,
      "detect_fraction": 0.8
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_14",
      "rank": 4,
      "gene": "TIGIT",
      "score_log1p_diff": 1.3861,
      "mean_log1p_expr": 1.4711,
      "detect_fraction": 0.8621
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "CD8A",
      "score_log1p_diff": 1.3378,
      "mean_log1p_expr": 1.4421,
      "detect_fraction": 0.8255
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "LTB",
      "score_log1p_diff": 1.1756,
      "mean_log1p_expr": 1.3784,
      "detect_fraction": 0.7667
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "FYN",
      "score_log1p_diff": 0.5568,
      "mean_log1p_expr": 1.2205,
      "detect_fraction": 0.7308
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_12",
      "rank": 5,
      "gene": "CCL4",
      "score_log1p_diff": 4.1131,
      "mean_log1p_expr": 4.5837,
      "detect_fraction": 0.975
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_5",
      "rank": 5,
      "gene": "CLEC3B",
      "score_log1p_diff": 3.4466,
      "mean_log1p_expr": 3.7149,
      "detect_fraction": 0.9655
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_15",
      "rank": 5,
      "gene": "DERL3",
      "score_log1p_diff": 3.0945,
      "mean_log1p_expr": 3.1055,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_7",
      "rank": 5,
      "gene": "LYZ",
      "score_log1p_diff": 3.0556,
      "mean_log1p_expr": 3.084,
      "detect_fraction": 0.9237
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_9",
      "rank": 5,
      "gene": "C11orf96",
      "score_log1p_diff": 2.7166,
      "mean_log1p_expr": 2.974,
      "detect_fraction": 0.95
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_17",
      "rank": 5,
      "gene": "IGFBP6",
      "score_log1p_diff": 2.472,
      "mean_log1p_expr": 3.2897,
      "detect_fraction": 0.9048
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_3",
      "rank": 5,
      "gene": "KRT19",
      "score_log1p_diff": 2.443,
      "mean_log1p_expr": 2.62,
      "detect_fraction": 0.8995
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_10",
      "rank": 5,
      "gene": "XBP1",
      "score_log1p_diff": 2.2813,
      "mean_log1p_expr": 3.0111,
      "detect_fraction": 0.9859
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_4",
      "rank": 5,
      "gene": "IGFBP4",
      "score_log1p_diff": 2.2314,
      "mean_log1p_expr": 2.9274,
      "detect_fraction": 0.9868
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_16",
      "rank": 5,
      "gene": "HLA-DQA1",
      "score_log1p_diff": 2.1578,
      "mean_log1p_expr": 2.589,
      "detect_fraction": 1
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_6",
      "rank": 5,
      "gene": "CCN1",
      "score_log1p_diff": 2.0326,
      "mean_log1p_expr": 2.8352,
      "detect_fraction": 0.8571
    },
    {
      "sample_id": "BRCA-071-17-1A",
      "cluster": "cluster_8",
      "rank": 5,
      "gene": "CST7",
      "score_log1p_diff": 1.8354,
      "mean_log1p_expr": 2.157,
      "detect_fraction": 0.989
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
