{ "generated_at": "2026-07-09 12:54:49 +0800", "dataset_id": "ds-cancerscem-2", "dataset_name": "CancerSCEM 2.0", "sample_id": "ESCC-111-31-1A", "donor_id": "ESCC-111-31-1A", "summary": { "sample_id": "ESCC-111-31-1A", "donor_id": "ESCC-111-31-1A", "cancer_type": "ESCC", "health_status": "Esophageal Squamous Cell Carcinoma; Tumour", "tissue_or_cell_source": "Tumour", "cells_in_umap_file": 4064, "cells_analyzed": 2000, "clusters": 22, "genes_read": 23925, "genes_nonzero_in_analyzed_cells": 23053, "mean_umi": 5034, "mean_genes": 1787, "mean_pct_mito": 4.179, "matrix_status": "Matrix available", "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=ESCC-111-31-1A", "umap_href": "IMG/umap/cancerscem-2/donor/ESCC-111-31-1A.png", "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/ESCC-111-31-1A.umap.tsv.gz", "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/ESCC-111-31-1A.summary.json" }, "visualizations": [ { "title": "Donor-level analysis panel", "href": "IMG/human-immune-analysis/cancerscem-deep/donor/ESCC-111-31-1A.analysis.png", "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes." } ], "cluster_qc": [ { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "cells": 241, "mean_umi": 3488.6058, "median_genes": 1348, "mean_pct_mito": 4.1141 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "cells": 239, "mean_umi": 4442.749, "median_genes": 1560, "mean_pct_mito": 4.5349 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "cells": 187, "mean_umi": 2754.0642, "median_genes": 1324, "mean_pct_mito": 3.1213 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "cells": 173, "mean_umi": 4814.6012, "median_genes": 1929, "mean_pct_mito": 3.8727 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "cells": 159, "mean_umi": 3577.8616, "median_genes": 1492, "mean_pct_mito": 4.1743 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "cells": 147, "mean_umi": 8631.2721, "median_genes": 2630, "mean_pct_mito": 3.2184 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "cells": 146, "mean_umi": 5244.1164, "median_genes": 1798, "mean_pct_mito": 4.8333 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "cells": 110, "mean_umi": 7391.7727, "median_genes": 2538, "mean_pct_mito": 6.7748 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "cells": 107, "mean_umi": 7284.8879, "median_genes": 1728, "mean_pct_mito": 3.3199 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "cells": 82, "mean_umi": 3919.6829, "median_genes": 1711, "mean_pct_mito": 4.2738 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "cells": 70, "mean_umi": 5440.0714, "median_genes": 2013, "mean_pct_mito": 4.9631 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "cells": 59, "mean_umi": 3158.678, "median_genes": 1467, "mean_pct_mito": 4.4318 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "cells": 57, "mean_umi": 3517.5965, "median_genes": 1452, "mean_pct_mito": 4.4646 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "cells": 54, "mean_umi": 1685.7778, "median_genes": 961.5, "mean_pct_mito": 5.1689 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "cells": 40, "mean_umi": 20719.3, "median_genes": 2250, "mean_pct_mito": 1.7366 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "cells": 39, "mean_umi": 7525.4359, "median_genes": 1808, "mean_pct_mito": 2.4534 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "cells": 24, "mean_umi": 2401.7917, "median_genes": 1052, "mean_pct_mito": 3.8188 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "cells": 20, "mean_umi": 3200.65, "median_genes": 1521.5, "mean_pct_mito": 4.9478 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "cells": 15, "mean_umi": 6766.3333, "median_genes": 2146, "mean_pct_mito": 4.7023 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "cells": 11, "mean_umi": 2831, "median_genes": 1314, "mean_pct_mito": 4.3534 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "cells": 10, "mean_umi": 3853, "median_genes": 1616, "mean_pct_mito": 6.1283 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "cells": 10, "mean_umi": 2569.5, "median_genes": 1467.5, "mean_pct_mito": 5.8591 } ], "program_scores": [ { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 2.3425 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.7229 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.0804 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.0633 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.6398 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.5006 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.4861 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3042 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3018 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2684 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2526 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2459 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1862 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1504 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1367 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1126 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0877 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0826 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0564 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0498 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.013 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.6414 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.5761 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.5447 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.3846 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.3566 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2118 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1653 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1611 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1559 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1092 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0794 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0644 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0496 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0479 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0472 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.036 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0173 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0137 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0098 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0071 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0032 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0032 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 1.2524 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.9597 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1744 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0654 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0629 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0611 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0246 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0208 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0167 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0157 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0133 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0099 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.009 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0089 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0056 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0055 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.004 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0038 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0036 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0022 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 1.7505 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 1.5301 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 1.2166 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.961 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.099 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.087 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0854 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0535 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0236 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0214 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0195 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0173 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0158 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0146 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0106 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0085 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0072 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0061 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0034 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0016 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 1.6466 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.8428 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0394 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0364 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0333 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0195 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0144 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0134 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.012 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0087 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0038 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.003 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0029 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0027 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0022 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0022 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0022 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0021 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0016 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.2032 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.8571 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.414 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.4133 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3817 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3748 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2707 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2572 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1681 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.167 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1469 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1203 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.112 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0916 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0734 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0656 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0543 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0319 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.029 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.028 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0154 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.014 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.5798 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.3341 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.2401 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.2056 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1865 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1216 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.094 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0785 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0716 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0691 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0603 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0508 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0463 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0404 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0396 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0345 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0284 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0198 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0189 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0177 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0143 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.3188 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.3043 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.1469 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.7215 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.3785 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.1036 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0409 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0277 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0206 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0199 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0156 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0126 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0069 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0061 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0057 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0046 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0042 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.002 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0013 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0009 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0006 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0004 } ], "program_summary": [ { "program": "B_plasma", "cluster_count": 22, "mean_score": 0.4584, "max_score": 2.3425, "mean_genes_used": 8 }, { "program": "Epithelial_tumor", "cluster_count": 22, "mean_score": 0.2697, "max_score": 1.7505, "mean_genes_used": 8 }, { "program": "Myeloid_APC", "cluster_count": 22, "mean_score": 0.2404, "max_score": 1.2032, "mean_genes_used": 9 }, { "program": "T_NK_cytotoxic", "cluster_count": 22, "mean_score": 0.2338, "max_score": 1.3188, "mean_genes_used": 10 }, { "program": "Checkpoint_exhaustion", "cluster_count": 22, "mean_score": 0.1675, "max_score": 0.6414, "mean_genes_used": 8 }, { "program": "Endothelial", "cluster_count": 22, "mean_score": 0.1236, "max_score": 1.2524, "mean_genes_used": 7 }, { "program": "Fibroblast_stroma", "cluster_count": 22, "mean_score": 0.1222, "max_score": 1.6466, "mean_genes_used": 8 }, { "program": "Proliferation", "cluster_count": 22, "mean_score": 0.1069, "max_score": 0.5798, "mean_genes_used": 7 } ], "top_markers": [ { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "rank": 1, "gene": "DCN", "score_log1p_diff": 4.1514, "mean_log1p_expr": 4.1638, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "rank": 1, "gene": "S100A9", "score_log1p_diff": 3.5237, "mean_log1p_expr": 3.9296, "detect_fraction": 0.8598 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "rank": 1, "gene": "SSR4", "score_log1p_diff": 3.4642, "mean_log1p_expr": 4.0601, "detect_fraction": 0.975 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "rank": 1, "gene": "IGFBP7", "score_log1p_diff": 3.135, "mean_log1p_expr": 3.2798, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "rank": 1, "gene": "IGFBP7", "score_log1p_diff": 3.0626, "mean_log1p_expr": 3.3019, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "rank": 1, "gene": "TPSAB1", "score_log1p_diff": 2.8278, "mean_log1p_expr": 2.8316, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "rank": 1, "gene": "CD74", "score_log1p_diff": 2.7724, "mean_log1p_expr": 4.7855, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "rank": 1, "gene": "CCL5", "score_log1p_diff": 2.7611, "mean_log1p_expr": 2.9421, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "rank": 1, "gene": "KRT19", "score_log1p_diff": 2.758, "mean_log1p_expr": 3.3269, "detect_fraction": 0.9636 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "rank": 1, "gene": "BACH2", "score_log1p_diff": 2.724, "mean_log1p_expr": 3.3743, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "rank": 1, "gene": "KRT17", "score_log1p_diff": 2.6858, "mean_log1p_expr": 3.1897, "detect_fraction": 0.9726 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "rank": 1, "gene": "PLAUR", "score_log1p_diff": 2.5259, "mean_log1p_expr": 2.6654, "detect_fraction": 0.9231 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "rank": 1, "gene": "CD74", "score_log1p_diff": 2.3999, "mean_log1p_expr": 4.33, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "rank": 1, "gene": "CD74", "score_log1p_diff": 2.3823, "mean_log1p_expr": 4.3121, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "rank": 1, "gene": "NKG7", "score_log1p_diff": 2.3092, "mean_log1p_expr": 2.4149, "detect_fraction": 0.9825 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "rank": 1, "gene": "CD7", "score_log1p_diff": 2.2751, "mean_log1p_expr": 2.5384, "detect_fraction": 0.9769 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "rank": 1, "gene": "CCL5", "score_log1p_diff": 2.2722, "mean_log1p_expr": 2.3739, "detect_fraction": 0.9756 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "rank": 1, "gene": "FYN", "score_log1p_diff": 2.0277, "mean_log1p_expr": 2.3987, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "rank": 1, "gene": "SIPA1L1", "score_log1p_diff": 1.7212, "mean_log1p_expr": 2.2275, "detect_fraction": 0.9815 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "rank": 1, "gene": "IFITM3", "score_log1p_diff": 1.6705, "mean_log1p_expr": 2.2818, "detect_fraction": 0.8983 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "rank": 1, "gene": "SRGN", "score_log1p_diff": 1.6508, "mean_log1p_expr": 2.5866, "detect_fraction": 0.9623 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "rank": 1, "gene": "S100A9", "score_log1p_diff": 1.5111, "mean_log1p_expr": 1.9642, "detect_fraction": 0.7807 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "rank": 2, "gene": "JCHAIN", "score_log1p_diff": 3.2723, "mean_log1p_expr": 3.3487, "detect_fraction": 0.85 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "rank": 2, "gene": "S100A8", "score_log1p_diff": 3.2063, "mean_log1p_expr": 3.5164, "detect_fraction": 0.8318 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "rank": 2, "gene": "FBLN1", "score_log1p_diff": 3.1635, "mean_log1p_expr": 3.1906, "detect_fraction": 0.9333 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "rank": 2, "gene": "SPARCL1", "score_log1p_diff": 2.9276, "mean_log1p_expr": 3.0307, "detect_fraction": 0.9571 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "rank": 2, "gene": "LPP", "score_log1p_diff": 2.7179, "mean_log1p_expr": 3.284, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "rank": 2, "gene": "CD7", "score_log1p_diff": 2.4388, "mean_log1p_expr": 2.8867, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "rank": 2, "gene": "KRT5", "score_log1p_diff": 2.3949, "mean_log1p_expr": 2.9097, "detect_fraction": 0.9727 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "rank": 2, "gene": "IFI30", "score_log1p_diff": 2.3892, "mean_log1p_expr": 2.7476, "detect_fraction": 0.7949 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "rank": 2, "gene": "VIM", "score_log1p_diff": 2.3412, "mean_log1p_expr": 3.1195, "detect_fraction": 0.9091 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "rank": 2, "gene": "TAGLN", "score_log1p_diff": 2.3376, "mean_log1p_expr": 2.3606, "detect_fraction": 0.9 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "rank": 2, "gene": "HLA-DRA", "score_log1p_diff": 2.2861, "mean_log1p_expr": 3.4537, "detect_fraction": 0.9932 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "rank": 2, "gene": "CCL5", "score_log1p_diff": 2.2287, "mean_log1p_expr": 2.36, "detect_fraction": 0.9474 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "rank": 2, "gene": "HLA-DRA", "score_log1p_diff": 2.189, "mean_log1p_expr": 3.2608, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "rank": 2, "gene": "CD7", "score_log1p_diff": 2.1244, "mean_log1p_expr": 2.4974, "detect_fraction": 0.9878 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "rank": 2, "gene": "HLA-DRA", "score_log1p_diff": 2.099, "mean_log1p_expr": 3.1838, "detect_fraction": 0.9958 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "rank": 2, "gene": "KRT19", "score_log1p_diff": 1.8596, "mean_log1p_expr": 2.4444, "detect_fraction": 0.9658 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "rank": 2, "gene": "CD3E", "score_log1p_diff": 1.8448, "mean_log1p_expr": 2.1149, "detect_fraction": 0.9827 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "rank": 2, "gene": "BACH2", "score_log1p_diff": 1.7034, "mean_log1p_expr": 2.3349, "detect_fraction": 0.9259 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "rank": 2, "gene": "IGFBP7", "score_log1p_diff": 1.6236, "mean_log1p_expr": 1.8302, "detect_fraction": 0.8305 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "rank": 2, "gene": "LDLRAD4", "score_log1p_diff": 1.5075, "mean_log1p_expr": 1.9323, "detect_fraction": 0.8333 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "rank": 2, "gene": "KRT6A", "score_log1p_diff": 1.4923, "mean_log1p_expr": 1.9434, "detect_fraction": 0.9519 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "rank": 2, "gene": "CD3E", "score_log1p_diff": 1.1402, "mean_log1p_expr": 1.4793, "detect_fraction": 0.9308 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "rank": 3, "gene": "MZB1", "score_log1p_diff": 3.2331, "mean_log1p_expr": 3.2987, "detect_fraction": 0.975 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "rank": 3, "gene": "CFD", "score_log1p_diff": 3.0678, "mean_log1p_expr": 3.1162, "detect_fraction": 0.8667 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "rank": 3, "gene": "ACKR1", "score_log1p_diff": 2.8425, "mean_log1p_expr": 2.8443, "detect_fraction": 0.9 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "rank": 3, "gene": "KRT17", "score_log1p_diff": 2.8181, "mean_log1p_expr": 3.3674, "detect_fraction": 0.9252 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "rank": 3, "gene": "EBF1", "score_log1p_diff": 2.4808, "mean_log1p_expr": 2.8292, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "rank": 3, "gene": "LYZ", "score_log1p_diff": 2.3234, "mean_log1p_expr": 2.3315, "detect_fraction": 0.7436 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "rank": 3, "gene": "CXCL14", "score_log1p_diff": 2.2732, "mean_log1p_expr": 2.5681, "detect_fraction": 0.9 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "rank": 3, "gene": "CPA3", "score_log1p_diff": 2.2136, "mean_log1p_expr": 2.2147, "detect_fraction": 0.9091 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "rank": 3, "gene": "ACTG1", "score_log1p_diff": 2.1926, "mean_log1p_expr": 3.992, "detect_fraction": 0.9932 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "rank": 3, "gene": "RGS5", "score_log1p_diff": 2.1831, "mean_log1p_expr": 2.1897, "detect_fraction": 0.8 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "rank": 3, "gene": "TRBV9", "score_log1p_diff": 2.156, "mean_log1p_expr": 2.1689, "detect_fraction": 0.9 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "rank": 3, "gene": "CD8A", "score_log1p_diff": 1.9154, "mean_log1p_expr": 1.9522, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_7", "rank": 3, "gene": "NEAT1", "score_log1p_diff": 1.7961, "mean_log1p_expr": 2.7178, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "rank": 3, "gene": "S100A4", "score_log1p_diff": 1.7778, "mean_log1p_expr": 2.0751, "detect_fraction": 0.9191 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_13", "rank": 3, "gene": "CST7", "score_log1p_diff": 1.7765, "mean_log1p_expr": 1.9587, "detect_fraction": 0.9649 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "rank": 3, "gene": "HLA-DRB5", "score_log1p_diff": 1.7579, "mean_log1p_expr": 2.6739, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_12", "rank": 3, "gene": "IFI27", "score_log1p_diff": 1.5995, "mean_log1p_expr": 2.0742, "detect_fraction": 0.8983 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_2", "rank": 3, "gene": "HLA-DRB5", "score_log1p_diff": 1.5187, "mean_log1p_expr": 2.4651, "detect_fraction": 0.9958 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_14", "rank": 3, "gene": "AFF3", "score_log1p_diff": 1.4904, "mean_log1p_expr": 1.8183, "detect_fraction": 0.8704 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_3", "rank": 3, "gene": "KRT19", "score_log1p_diff": 1.4066, "mean_log1p_expr": 1.9956, "detect_fraction": 0.9091 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_17", "rank": 3, "gene": "MAML2", "score_log1p_diff": 1.3251, "mean_log1p_expr": 1.5557, "detect_fraction": 0.8333 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_5", "rank": 3, "gene": "FYB1", "score_log1p_diff": 1.107, "mean_log1p_expr": 1.3154, "detect_fraction": 0.8931 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_19", "rank": 4, "gene": "PTGDS", "score_log1p_diff": 2.9884, "mean_log1p_expr": 3.0076, "detect_fraction": 0.9333 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_15", "rank": 4, "gene": "DERL3", "score_log1p_diff": 2.7919, "mean_log1p_expr": 2.8278, "detect_fraction": 0.975 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_9", "rank": 4, "gene": "S100A2", "score_log1p_diff": 2.7266, "mean_log1p_expr": 3.1147, "detect_fraction": 0.9346 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_11", "rank": 4, "gene": "VIM", "score_log1p_diff": 2.6077, "mean_log1p_expr": 3.3076, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_6", "rank": 4, "gene": "ACTB", "score_log1p_diff": 2.1718, "mean_log1p_expr": 4.717, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_18", "rank": 4, "gene": "RABGAP1L", "score_log1p_diff": 2.1516, "mean_log1p_expr": 2.6974, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_16", "rank": 4, "gene": "IL1B", "score_log1p_diff": 2.1513, "mean_log1p_expr": 2.1731, "detect_fraction": 0.7179 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_8", "rank": 4, "gene": "HSPB1", "score_log1p_diff": 2.1161, "mean_log1p_expr": 2.9395, "detect_fraction": 0.9909 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_22", "rank": 4, "gene": "ACTA2", "score_log1p_diff": 2.0258, "mean_log1p_expr": 2.037, "detect_fraction": 0.9 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_10", "rank": 4, "gene": "CXCL13", "score_log1p_diff": 1.9134, "mean_log1p_expr": 1.9816, "detect_fraction": 0.8171 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_21", "rank": 4, "gene": "GZMB", "score_log1p_diff": 1.8978, "mean_log1p_expr": 2.0753, "detect_fraction": 1 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_20", "rank": 4, "gene": "CLU", "score_log1p_diff": 1.8733, "mean_log1p_expr": 2.0819, "detect_fraction": 0.9091 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_4", "rank": 4, "gene": "SRGN", "score_log1p_diff": 1.7569, "mean_log1p_expr": 2.6719, "detect_fraction": 0.9884 }, { "sample_id": "ESCC-111-31-1A", "cluster": "cluster_1", "rank": 4, "gene": "CD79A", "score_log1p_diff": 1.7172, "mean_log1p_expr": 2.326, "detect_fraction": 0.9959 } ], "source_tables": { "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv", "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv", "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv", "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv" } }