{ "generated_at": "2026-07-09 12:54:49 +0800", "dataset_id": "ds-cancerscem-2", "dataset_name": "CancerSCEM 2.0", "sample_id": "ESCC-111-40-1A", "donor_id": "ESCC-111-40-1A", "summary": { "sample_id": "ESCC-111-40-1A", "donor_id": "ESCC-111-40-1A", "cancer_type": "ESCC", "health_status": "Esophageal Squamous Cell Carcinoma; Tumour", "tissue_or_cell_source": "Tumour", "cells_in_umap_file": 4237, "cells_analyzed": 2000, "clusters": 18, "genes_read": 23122, "genes_nonzero_in_analyzed_cells": 22069, "mean_umi": 5442, "mean_genes": 1858, "mean_pct_mito": 4.879, "matrix_status": "Matrix available", "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=ESCC-111-40-1A", "umap_href": "IMG/umap/cancerscem-2/donor/ESCC-111-40-1A.png", "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/ESCC-111-40-1A.umap.tsv.gz", "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/ESCC-111-40-1A.summary.json" }, "visualizations": [ { "title": "Donor-level analysis panel", "href": "IMG/human-immune-analysis/cancerscem-deep/donor/ESCC-111-40-1A.analysis.png", "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes." } ], "cluster_qc": [ { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "cells": 287, "mean_umi": 4829.9686, "median_genes": 1628, "mean_pct_mito": 5.2629 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "cells": 243, "mean_umi": 4470.8107, "median_genes": 1490, "mean_pct_mito": 4.24 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "cells": 221, "mean_umi": 7196.3213, "median_genes": 2440, "mean_pct_mito": 5.1164 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "cells": 199, "mean_umi": 4182.5126, "median_genes": 1630, "mean_pct_mito": 4.6407 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "cells": 195, "mean_umi": 4523.8923, "median_genes": 1562, "mean_pct_mito": 5.1793 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "cells": 183, "mean_umi": 4681.2131, "median_genes": 1825, "mean_pct_mito": 5.9354 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "cells": 143, "mean_umi": 5723.4965, "median_genes": 2290, "mean_pct_mito": 4.5062 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "cells": 97, "mean_umi": 4465.6392, "median_genes": 1653, "mean_pct_mito": 4.3206 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "cells": 84, "mean_umi": 4582.25, "median_genes": 1872.5, "mean_pct_mito": 5.4192 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "cells": 80, "mean_umi": 9766.2875, "median_genes": 2305.5, "mean_pct_mito": 3.9538 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "cells": 68, "mean_umi": 6590.8824, "median_genes": 2018.5, "mean_pct_mito": 4.4968 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "cells": 61, "mean_umi": 4066.2131, "median_genes": 1648, "mean_pct_mito": 4.9189 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "cells": 61, "mean_umi": 4161.7377, "median_genes": 1618, "mean_pct_mito": 4.7373 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "cells": 25, "mean_umi": 8631.04, "median_genes": 3042, "mean_pct_mito": 5.0343 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "cells": 21, "mean_umi": 21484.8571, "median_genes": 2070, "mean_pct_mito": 2.8527 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "cells": 13, "mean_umi": 6130.0769, "median_genes": 1953, "mean_pct_mito": 5.1261 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "cells": 12, "mean_umi": 6380.6667, "median_genes": 1673.5, "mean_pct_mito": 5.494 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "cells": 7, "mean_umi": 8271.7143, "median_genes": 2507, "mean_pct_mito": 2.7271 } ], "program_scores": [ { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 2.6009 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.3255 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.1983 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.1737 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.5412 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.4615 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.342 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2849 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2596 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2362 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2255 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.168 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1409 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.128 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1043 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0979 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0546 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0187 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.3486 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2313 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1661 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1543 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.127 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0856 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0796 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0758 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0692 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0614 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0529 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0429 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0382 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0367 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0328 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.032 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0133 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0129 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 1.2232 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 1.0759 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 1.0149 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1436 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1111 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1035 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1004 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0759 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0507 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0424 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0259 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0194 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0179 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0122 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0112 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0068 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.005 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.002 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 1.3025 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.1697 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0764 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0525 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0411 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.032 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0263 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0189 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.015 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0107 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0079 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0073 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0057 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0048 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0043 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0041 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.004 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0032 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 2.8311 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 1.8728 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 1.5149 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 1.5144 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0521 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0445 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.04 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0319 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0125 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0112 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0065 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0055 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0051 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0043 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0041 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0014 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0009 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.5857 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.4259 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.4092 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3775 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3434 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.222 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1108 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0893 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0669 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.06 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0296 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0275 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0263 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0204 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0203 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0128 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0122 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0062 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.3583 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.227 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.221 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1561 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1318 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1194 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0948 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0686 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0618 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0497 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0492 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0379 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0374 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0343 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0339 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0311 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0306 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0295 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.1987 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.9853 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.4597 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.4115 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.3063 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0783 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0477 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0159 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0157 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0147 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0138 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.013 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0099 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0073 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0058 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0057 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0033 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0019 } ], "program_summary": [ { "program": "B_plasma", "cluster_count": 18, "mean_score": 0.5201, "max_score": 2.6009, "mean_genes_used": 8 }, { "program": "Fibroblast_stroma", "cluster_count": 18, "mean_score": 0.4418, "max_score": 2.8311, "mean_genes_used": 8 }, { "program": "Endothelial", "cluster_count": 18, "mean_score": 0.2246, "max_score": 1.2232, "mean_genes_used": 7 }, { "program": "Myeloid_APC", "cluster_count": 18, "mean_score": 0.2137, "max_score": 1.5857, "mean_genes_used": 9 }, { "program": "T_NK_cytotoxic", "cluster_count": 18, "mean_score": 0.1997, "max_score": 1.1987, "mean_genes_used": 10 }, { "program": "Epithelial_tumor", "cluster_count": 18, "mean_score": 0.0992, "max_score": 1.3025, "mean_genes_used": 8 }, { "program": "Proliferation", "cluster_count": 18, "mean_score": 0.0985, "max_score": 0.3583, "mean_genes_used": 7 }, { "program": "Checkpoint_exhaustion", "cluster_count": 18, "mean_score": 0.0923, "max_score": 0.3486, "mean_genes_used": 8 } ], "top_markers": [ { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "rank": 1, "gene": "JCHAIN", "score_log1p_diff": 4.8781, "mean_log1p_expr": 4.9878, "detect_fraction": 0.9048 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "rank": 1, "gene": "COL1A1", "score_log1p_diff": 4.1537, "mean_log1p_expr": 4.4553, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "rank": 1, "gene": "MGP", "score_log1p_diff": 4.0783, "mean_log1p_expr": 4.6697, "detect_fraction": 0.9955 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "rank": 1, "gene": "CCL21", "score_log1p_diff": 3.9368, "mean_log1p_expr": 3.9462, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "rank": 1, "gene": "DCN", "score_log1p_diff": 3.7896, "mean_log1p_expr": 4.3784, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "rank": 1, "gene": "TPSAB1", "score_log1p_diff": 3.5446, "mean_log1p_expr": 3.5492, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "rank": 1, "gene": "IL1B", "score_log1p_diff": 3.0246, "mean_log1p_expr": 3.0358, "detect_fraction": 0.7875 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "rank": 1, "gene": "TAGLN", "score_log1p_diff": 2.844, "mean_log1p_expr": 2.9495, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "rank": 1, "gene": "GZMB", "score_log1p_diff": 2.7273, "mean_log1p_expr": 2.8652, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "rank": 1, "gene": "ACKR1", "score_log1p_diff": 2.6881, "mean_log1p_expr": 2.7127, "detect_fraction": 0.9672 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "rank": 1, "gene": "KRT19", "score_log1p_diff": 2.5594, "mean_log1p_expr": 2.5715, "detect_fraction": 0.8824 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "rank": 1, "gene": "GNLY", "score_log1p_diff": 2.5485, "mean_log1p_expr": 2.6244, "detect_fraction": 0.8361 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "rank": 1, "gene": "CCL5", "score_log1p_diff": 2.5335, "mean_log1p_expr": 2.6737, "detect_fraction": 0.9698 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "rank": 1, "gene": "HLA-DRA", "score_log1p_diff": 2.4362, "mean_log1p_expr": 3.5435, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "rank": 1, "gene": "CD74", "score_log1p_diff": 2.3397, "mean_log1p_expr": 4.4888, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "rank": 1, "gene": "IL32", "score_log1p_diff": 1.976, "mean_log1p_expr": 2.7822, "detect_fraction": 0.9691 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "rank": 1, "gene": "TM4SF1", "score_log1p_diff": 1.8695, "mean_log1p_expr": 2.151, "detect_fraction": 0.9167 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "rank": 1, "gene": "CD3E", "score_log1p_diff": 1.2151, "mean_log1p_expr": 1.5383, "detect_fraction": 0.9424 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "rank": 2, "gene": "IGKC", "score_log1p_diff": 4.4909, "mean_log1p_expr": 4.6549, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "rank": 2, "gene": "DCN", "score_log1p_diff": 3.9661, "mean_log1p_expr": 4.3876, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "rank": 2, "gene": "COL3A1", "score_log1p_diff": 3.9571, "mean_log1p_expr": 4.2382, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "rank": 2, "gene": "MGP", "score_log1p_diff": 3.5909, "mean_log1p_expr": 4.3761, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "rank": 2, "gene": "TPSB2", "score_log1p_diff": 3.0513, "mean_log1p_expr": 3.0546, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "rank": 2, "gene": "IFI30", "score_log1p_diff": 2.8448, "mean_log1p_expr": 3.1262, "detect_fraction": 0.95 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "rank": 2, "gene": "ACTA2", "score_log1p_diff": 2.7555, "mean_log1p_expr": 2.8098, "detect_fraction": 0.9167 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "rank": 2, "gene": "CD74", "score_log1p_diff": 2.6717, "mean_log1p_expr": 5.1472, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "rank": 2, "gene": "CD74", "score_log1p_diff": 2.3671, "mean_log1p_expr": 4.6211, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "rank": 2, "gene": "TFF3", "score_log1p_diff": 2.2542, "mean_log1p_expr": 2.2613, "detect_fraction": 0.8462 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "rank": 2, "gene": "HLA-DRA", "score_log1p_diff": 2.2397, "mean_log1p_expr": 3.2632, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "rank": 2, "gene": "TM4SF1", "score_log1p_diff": 2.2158, "mean_log1p_expr": 2.3731, "detect_fraction": 0.9727 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "rank": 2, "gene": "CD24", "score_log1p_diff": 2.1806, "mean_log1p_expr": 2.2976, "detect_fraction": 0.8676 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "rank": 2, "gene": "NKG7", "score_log1p_diff": 2.094, "mean_log1p_expr": 2.2875, "detect_fraction": 0.9016 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "rank": 2, "gene": "IGFBP7", "score_log1p_diff": 1.8227, "mean_log1p_expr": 2.6982, "detect_fraction": 0.8929 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "rank": 2, "gene": "NKG7", "score_log1p_diff": 1.6004, "mean_log1p_expr": 1.6985, "detect_fraction": 0.8693 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "rank": 2, "gene": "BATF", "score_log1p_diff": 1.4747, "mean_log1p_expr": 1.5918, "detect_fraction": 0.8969 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "rank": 2, "gene": "IL7R", "score_log1p_diff": 1.1979, "mean_log1p_expr": 1.3864, "detect_fraction": 0.8025 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "rank": 3, "gene": "CFD", "score_log1p_diff": 3.943, "mean_log1p_expr": 4.1727, "detect_fraction": 0.9774 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "rank": 3, "gene": "COL1A2", "score_log1p_diff": 3.6204, "mean_log1p_expr": 4.0695, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "rank": 3, "gene": "GSN", "score_log1p_diff": 3.2546, "mean_log1p_expr": 3.9462, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "rank": 3, "gene": "SSR4", "score_log1p_diff": 3.1484, "mean_log1p_expr": 3.9565, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "rank": 3, "gene": "CPA3", "score_log1p_diff": 2.967, "mean_log1p_expr": 2.9705, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "rank": 3, "gene": "CXCL8", "score_log1p_diff": 2.7281, "mean_log1p_expr": 2.7891, "detect_fraction": 0.875 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "rank": 3, "gene": "GPR183", "score_log1p_diff": 2.6466, "mean_log1p_expr": 3.2001, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "rank": 3, "gene": "MYL9", "score_log1p_diff": 2.4841, "mean_log1p_expr": 2.7056, "detect_fraction": 0.9167 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "rank": 3, "gene": "IGFBP7", "score_log1p_diff": 2.1865, "mean_log1p_expr": 3.1244, "detect_fraction": 0.9231 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "rank": 3, "gene": "IGFBP7", "score_log1p_diff": 2.0615, "mean_log1p_expr": 2.825, "detect_fraction": 0.9891 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "rank": 3, "gene": "IFI27", "score_log1p_diff": 1.7979, "mean_log1p_expr": 2.1847, "detect_fraction": 0.9286 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "rank": 3, "gene": "CD79A", "score_log1p_diff": 1.7931, "mean_log1p_expr": 2.1567, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "rank": 3, "gene": "CCL5", "score_log1p_diff": 1.7863, "mean_log1p_expr": 2.1241, "detect_fraction": 0.8033 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "rank": 3, "gene": "KRT5", "score_log1p_diff": 1.7633, "mean_log1p_expr": 1.7708, "detect_fraction": 0.75 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "rank": 3, "gene": "CD83", "score_log1p_diff": 1.7282, "mean_log1p_expr": 2.3857, "detect_fraction": 0.9826 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "rank": 3, "gene": "GZMA", "score_log1p_diff": 1.4272, "mean_log1p_expr": 1.5047, "detect_fraction": 0.8593 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "rank": 3, "gene": "CD7", "score_log1p_diff": 1.2652, "mean_log1p_expr": 1.5833, "detect_fraction": 0.8763 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "rank": 3, "gene": "SRGN", "score_log1p_diff": 1.0161, "mean_log1p_expr": 2.1742, "detect_fraction": 0.9588 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "rank": 4, "gene": "SFRP2", "score_log1p_diff": 3.5812, "mean_log1p_expr": 3.8192, "detect_fraction": 0.9864 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "rank": 4, "gene": "SPARC", "score_log1p_diff": 3.1806, "mean_log1p_expr": 3.7971, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "rank": 4, "gene": "MZB1", "score_log1p_diff": 3.1423, "mean_log1p_expr": 3.1772, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "rank": 4, "gene": "APOD", "score_log1p_diff": 2.9499, "mean_log1p_expr": 3.1069, "detect_fraction": 0.9371 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "rank": 4, "gene": "TYROBP", "score_log1p_diff": 2.6447, "mean_log1p_expr": 2.7491, "detect_fraction": 0.9625 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "rank": 4, "gene": "SOX4", "score_log1p_diff": 2.5219, "mean_log1p_expr": 2.6893, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "rank": 4, "gene": "IGFBP7", "score_log1p_diff": 2.3624, "mean_log1p_expr": 3.3003, "detect_fraction": 0.9167 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_16", "rank": 4, "gene": "CLDN5", "score_log1p_diff": 2.0339, "mean_log1p_expr": 2.1873, "detect_fraction": 0.9231 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "rank": 4, "gene": "TPSD1", "score_log1p_diff": 1.943, "mean_log1p_expr": 1.944, "detect_fraction": 0.9672 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_6", "rank": 4, "gene": "SELE", "score_log1p_diff": 1.9353, "mean_log1p_expr": 1.9612, "detect_fraction": 0.8142 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_5", "rank": 4, "gene": "HLA-DQA1", "score_log1p_diff": 1.7744, "mean_log1p_expr": 2.3707, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_9", "rank": 4, "gene": "RAMP2", "score_log1p_diff": 1.7444, "mean_log1p_expr": 1.9429, "detect_fraction": 0.9286 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_1", "rank": 4, "gene": "CD79A", "score_log1p_diff": 1.6835, "mean_log1p_expr": 1.9802, "detect_fraction": 0.993 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_11", "rank": 4, "gene": "HSPB1", "score_log1p_diff": 1.4785, "mean_log1p_expr": 2.314, "detect_fraction": 0.9412 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_12", "rank": 4, "gene": "GZMA", "score_log1p_diff": 1.4699, "mean_log1p_expr": 1.6446, "detect_fraction": 0.7705 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_4", "rank": 4, "gene": "CD8A", "score_log1p_diff": 1.3715, "mean_log1p_expr": 1.3886, "detect_fraction": 0.7538 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_8", "rank": 4, "gene": "CD3E", "score_log1p_diff": 1.131, "mean_log1p_expr": 1.547, "detect_fraction": 0.9175 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_2", "rank": 4, "gene": "IL32", "score_log1p_diff": 0.9519, "mean_log1p_expr": 1.7383, "detect_fraction": 0.9095 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_3", "rank": 5, "gene": "FBLN1", "score_log1p_diff": 3.4065, "mean_log1p_expr": 3.7289, "detect_fraction": 0.991 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_14", "rank": 5, "gene": "LUM", "score_log1p_diff": 2.8593, "mean_log1p_expr": 3.4133, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_7", "rank": 5, "gene": "LUM", "score_log1p_diff": 2.7118, "mean_log1p_expr": 3.1077, "detect_fraction": 0.986 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_10", "rank": 5, "gene": "PLAUR", "score_log1p_diff": 2.5962, "mean_log1p_expr": 2.7194, "detect_fraction": 0.925 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_15", "rank": 5, "gene": "MT1X", "score_log1p_diff": 2.5093, "mean_log1p_expr": 3.5389, "detect_fraction": 0.7619 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_18", "rank": 5, "gene": "IRF4", "score_log1p_diff": 2.4024, "mean_log1p_expr": 2.5308, "detect_fraction": 1 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_17", "rank": 5, "gene": "CALD1", "score_log1p_diff": 2.1076, "mean_log1p_expr": 2.4902, "detect_fraction": 0.9167 }, { "sample_id": "ESCC-111-40-1A", "cluster": "cluster_13", "rank": 5, "gene": "GATA2", "score_log1p_diff": 1.8833, "mean_log1p_expr": 1.9086, "detect_fraction": 0.918 } ], "source_tables": { "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv", "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv", "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv", "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv" } }