{ "generated_at": "2026-07-09 12:54:49 +0800", "dataset_id": "ds-cancerscem-2", "dataset_name": "CancerSCEM 2.0", "sample_id": "GC-035-03-1A", "donor_id": "GC-035-03-1A", "summary": { "sample_id": "GC-035-03-1A", "donor_id": "GC-035-03-1A", "cancer_type": "GC", "health_status": "Gastric Cancer; PBMC", "tissue_or_cell_source": "PBMC", "cells_in_umap_file": 12120, "cells_analyzed": 1999, "clusters": 27, "genes_read": 21265, "genes_nonzero_in_analyzed_cells": 19203, "mean_umi": 4784, "mean_genes": 1833, "mean_pct_mito": 3.242, "matrix_status": "Matrix available", "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=GC-035-03-1A", "umap_href": "IMG/umap/cancerscem-2/donor/GC-035-03-1A.png", "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/GC-035-03-1A.umap.tsv.gz", "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/GC-035-03-1A.summary.json" }, "visualizations": [ { "title": "Donor-level analysis panel", "href": "IMG/human-immune-analysis/cancerscem-deep/donor/GC-035-03-1A.analysis.png", "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes." } ], "cluster_qc": [ { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "cells": 407, "mean_umi": 3717.2948, "median_genes": 1602, "mean_pct_mito": 3.107 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "cells": 289, "mean_umi": 3920.2249, "median_genes": 1749, "mean_pct_mito": 3.0281 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "cells": 225, "mean_umi": 5877.9067, "median_genes": 2184, "mean_pct_mito": 3.0094 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "cells": 165, "mean_umi": 5135.1818, "median_genes": 1723, "mean_pct_mito": 3.7253 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "cells": 124, "mean_umi": 8220.2823, "median_genes": 2677.5, "mean_pct_mito": 2.8882 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "cells": 119, "mean_umi": 1783.3782, "median_genes": 810, "mean_pct_mito": 3.5127 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "cells": 101, "mean_umi": 4891.5248, "median_genes": 1877, "mean_pct_mito": 3.1501 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "cells": 83, "mean_umi": 4850.1446, "median_genes": 1892, "mean_pct_mito": 3.488 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "cells": 71, "mean_umi": 5147.8451, "median_genes": 1640, "mean_pct_mito": 4.0721 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "cells": 62, "mean_umi": 4733.4516, "median_genes": 1827, "mean_pct_mito": 2.6714 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "cells": 48, "mean_umi": 4814.7292, "median_genes": 1626.5, "mean_pct_mito": 4.2944 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "cells": 45, "mean_umi": 4346.8222, "median_genes": 1894, "mean_pct_mito": 3.6591 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "cells": 44, "mean_umi": 5030.75, "median_genes": 1864, "mean_pct_mito": 3.9625 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "cells": 39, "mean_umi": 4463.8205, "median_genes": 1840, "mean_pct_mito": 2.9711 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "cells": 25, "mean_umi": 9953.88, "median_genes": 3057, "mean_pct_mito": 2.6733 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "cells": 22, "mean_umi": 4749.6818, "median_genes": 1819, "mean_pct_mito": 3.0733 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "cells": 20, "mean_umi": 4111.7, "median_genes": 1664, "mean_pct_mito": 2.7538 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "cells": 18, "mean_umi": 7697.8333, "median_genes": 2568.5, "mean_pct_mito": 3.5806 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "cells": 15, "mean_umi": 13433.2667, "median_genes": 1154, "mean_pct_mito": 2.9137 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "cells": 14, "mean_umi": 2221.1429, "median_genes": 530.5, "mean_pct_mito": 2.5494 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "cells": 14, "mean_umi": 4358.5714, "median_genes": 1629.5, "mean_pct_mito": 3.6102 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "cells": 14, "mean_umi": 5180.9286, "median_genes": 1779, "mean_pct_mito": 2.8664 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "cells": 13, "mean_umi": 5507.1538, "median_genes": 1882, "mean_pct_mito": 3.7987 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "cells": 10, "mean_umi": 7143.8, "median_genes": 2412, "mean_pct_mito": 2.6703 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "cells": 5, "mean_umi": 4527.8, "median_genes": 1646, "mean_pct_mito": 4.7397 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "cells": 4, "mean_umi": 4454.75, "median_genes": 1729.5, "mean_pct_mito": 2.4719 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "cells": 3, "mean_umi": 4822, "median_genes": 1761, "mean_pct_mito": 5.5853 } ], "program_scores": [ { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.7595 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 1.5169 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.656 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.5868 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.5822 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.4812 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3631 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3593 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3529 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.32 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3008 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2991 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2965 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2907 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2864 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2653 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2602 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.249 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2386 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2344 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2169 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2055 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1988 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1953 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1875 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1472 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1345 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2553 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2274 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2056 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1863 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1782 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1656 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.162 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1416 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.141 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1336 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1177 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.114 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1083 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1004 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0971 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0881 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0851 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0737 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0634 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0535 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0515 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0448 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0442 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0414 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0345 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0222 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0137 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.3309 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.232 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.188 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.1848 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.1403 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.1245 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.123 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.077 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0717 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0567 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0553 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0464 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0447 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0438 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0437 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0427 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0416 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0326 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0298 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0291 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0208 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0189 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0142 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0099 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0.0089 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "Endothelial", "genes_used": 5, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0.011 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0.0046 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0.0014 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0.0008 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0.0002 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "Epithelial_tumor", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.1788 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0886 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0672 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0637 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0609 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0495 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0385 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0245 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0236 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0183 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0178 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0165 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0116 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0105 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0103 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0097 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0084 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0084 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0064 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0.0033 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "Fibroblast_stroma", "genes_used": 3, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 2.5085 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.9284 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.6976 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.6542 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.5446 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.2306 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.8914 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.5266 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.4496 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3844 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3506 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2622 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2608 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2309 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2241 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2226 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.222 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1868 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1696 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1573 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1526 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1483 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1371 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1016 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0557 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0418 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0308 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.9298 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1325 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0861 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0785 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.071 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0609 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0563 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0561 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0536 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0529 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0529 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0456 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0419 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0385 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0385 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0364 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0341 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0326 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0299 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0292 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0286 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0271 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0221 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0112 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0096 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0059 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 2.0409 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.8901 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.8211 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.7683 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.7186 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.6958 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.6864 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.6844 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.6727 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.6528 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.62 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.6065 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.5865 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.4652 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.0388 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.5985 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.4865 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.4673 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.2367 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.1211 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0818 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0369 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0366 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0337 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0247 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0242 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0124 } ], "program_summary": [ { "program": "T_NK_cytotoxic", "cluster_count": 27, "mean_score": 1.004, "max_score": 2.0409, "mean_genes_used": 10 }, { "program": "Myeloid_APC", "cluster_count": 27, "mean_score": 0.5841, "max_score": 2.5085, "mean_genes_used": 9 }, { "program": "B_plasma", "cluster_count": 27, "mean_score": 0.4068, "max_score": 1.7595, "mean_genes_used": 8 }, { "program": "Checkpoint_exhaustion", "cluster_count": 27, "mean_score": 0.1093, "max_score": 0.2553, "mean_genes_used": 8 }, { "program": "Proliferation", "cluster_count": 27, "mean_score": 0.0764, "max_score": 0.9298, "mean_genes_used": 7 }, { "program": "Endothelial", "cluster_count": 27, "mean_score": 0.0745, "max_score": 0.3309, "mean_genes_used": 5 }, { "program": "Fibroblast_stroma", "cluster_count": 27, "mean_score": 0.0265, "max_score": 0.1788, "mean_genes_used": 3 }, { "program": "Epithelial_tumor", "cluster_count": 27, "mean_score": 0.0007, "max_score": 0.011, "mean_genes_used": 7 } ], "top_markers": [ { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "rank": 1, "gene": "JCHAIN", "score_log1p_diff": 4.0025, "mean_log1p_expr": 4.0268, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "rank": 1, "gene": "GNLY", "score_log1p_diff": 3.1568, "mean_log1p_expr": 3.6307, "detect_fraction": 0.9931 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "rank": 1, "gene": "S100A8", "score_log1p_diff": 2.8821, "mean_log1p_expr": 3.6701, "detect_fraction": 0.9975 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "rank": 1, "gene": "CST3", "score_log1p_diff": 2.8785, "mean_log1p_expr": 4.1693, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "rank": 1, "gene": "GNLY", "score_log1p_diff": 2.8565, "mean_log1p_expr": 3.7225, "detect_fraction": 0.9778 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "rank": 1, "gene": "TRBV13", "score_log1p_diff": 2.7782, "mean_log1p_expr": 2.7868, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "rank": 1, "gene": "PPBP", "score_log1p_diff": 2.7638, "mean_log1p_expr": 2.7952, "detect_fraction": 0.9286 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "rank": 1, "gene": "GNLY", "score_log1p_diff": 2.7218, "mean_log1p_expr": 3.599, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "rank": 1, "gene": "LST1", "score_log1p_diff": 2.7178, "mean_log1p_expr": 3.471, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "rank": 1, "gene": "GNLY", "score_log1p_diff": 2.6672, "mean_log1p_expr": 3.5801, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "rank": 1, "gene": "LYZ", "score_log1p_diff": 2.5702, "mean_log1p_expr": 3.8552, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "rank": 1, "gene": "GNLY", "score_log1p_diff": 2.5546, "mean_log1p_expr": 3.467, "detect_fraction": 0.9286 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "rank": 1, "gene": "IL7R", "score_log1p_diff": 2.5539, "mean_log1p_expr": 2.7905, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "rank": 1, "gene": "TRBV9", "score_log1p_diff": 2.4698, "mean_log1p_expr": 2.4984, "detect_fraction": 0.9839 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "rank": 1, "gene": "CD74", "score_log1p_diff": 2.3961, "mean_log1p_expr": 4.7595, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "rank": 1, "gene": "TRBV6-5", "score_log1p_diff": 2.3915, "mean_log1p_expr": 2.418, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "rank": 1, "gene": "TRBV14", "score_log1p_diff": 2.3424, "mean_log1p_expr": 2.3476, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "rank": 1, "gene": "CCL5", "score_log1p_diff": 2.3216, "mean_log1p_expr": 3.4891, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "rank": 1, "gene": "TRDV2", "score_log1p_diff": 2.2749, "mean_log1p_expr": 2.2826, "detect_fraction": 0.9545 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "rank": 1, "gene": "LRMDA", "score_log1p_diff": 2.2466, "mean_log1p_expr": 2.5593, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "rank": 1, "gene": "NKG7", "score_log1p_diff": 2.236, "mean_log1p_expr": 3.7144, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "rank": 1, "gene": "CST3", "score_log1p_diff": 2.2205, "mean_log1p_expr": 3.2973, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "rank": 1, "gene": "LTB", "score_log1p_diff": 2.0722, "mean_log1p_expr": 2.4833, "detect_fraction": 0.9758 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "rank": 1, "gene": "IL32", "score_log1p_diff": 1.9892, "mean_log1p_expr": 3.0338, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "rank": 1, "gene": "IL32", "score_log1p_diff": 1.9435, "mean_log1p_expr": 2.9118, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "rank": 1, "gene": "LTB", "score_log1p_diff": 1.7193, "mean_log1p_expr": 2.2404, "detect_fraction": 0.9718 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "rank": 1, "gene": "S100A8", "score_log1p_diff": 1.4143, "mean_log1p_expr": 2.7049, "detect_fraction": 0.9328 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "rank": 2, "gene": "S100A9", "score_log1p_diff": 2.8091, "mean_log1p_expr": 3.599, "detect_fraction": 0.9951 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "rank": 2, "gene": "C1QA", "score_log1p_diff": 2.7643, "mean_log1p_expr": 2.7963, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "rank": 2, "gene": "IFITM3", "score_log1p_diff": 2.6996, "mean_log1p_expr": 3.9015, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "rank": 2, "gene": "NKG7", "score_log1p_diff": 2.6648, "mean_log1p_expr": 3.7691, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "rank": 2, "gene": "TRBV10-3", "score_log1p_diff": 2.5701, "mean_log1p_expr": 2.5728, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "rank": 2, "gene": "IGKV1D-16", "score_log1p_diff": 2.561, "mean_log1p_expr": 2.5616, "detect_fraction": 0.5333 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "rank": 2, "gene": "CST3", "score_log1p_diff": 2.5492, "mean_log1p_expr": 3.853, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "rank": 2, "gene": "TRAV13-2", "score_log1p_diff": 2.3899, "mean_log1p_expr": 2.4103, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "rank": 2, "gene": "CD79A", "score_log1p_diff": 2.3345, "mean_log1p_expr": 2.3567, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "rank": 2, "gene": "NKG7", "score_log1p_diff": 2.31, "mean_log1p_expr": 3.7546, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "rank": 2, "gene": "NKG7", "score_log1p_diff": 2.2665, "mean_log1p_expr": 3.7051, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "rank": 2, "gene": "NKG7", "score_log1p_diff": 2.259, "mean_log1p_expr": 3.6785, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "rank": 2, "gene": "NKG7", "score_log1p_diff": 2.2188, "mean_log1p_expr": 3.6162, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "rank": 2, "gene": "STMN1", "score_log1p_diff": 2.2151, "mean_log1p_expr": 2.3192, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "rank": 2, "gene": "CD8B", "score_log1p_diff": 2.2123, "mean_log1p_expr": 2.44, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "rank": 2, "gene": "IFI30", "score_log1p_diff": 2.1382, "mean_log1p_expr": 3.111, "detect_fraction": 0.9911 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "rank": 2, "gene": "TRGV2", "score_log1p_diff": 2.1243, "mean_log1p_expr": 2.1513, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "rank": 2, "gene": "KLRB1", "score_log1p_diff": 2.0659, "mean_log1p_expr": 2.5468, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "rank": 2, "gene": "CCL5", "score_log1p_diff": 2.0593, "mean_log1p_expr": 3.3088, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "rank": 2, "gene": "PLXDC2", "score_log1p_diff": 2.0536, "mean_log1p_expr": 2.4695, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "rank": 2, "gene": "NKG7", "score_log1p_diff": 1.9642, "mean_log1p_expr": 3.4322, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "rank": 2, "gene": "TRGV9", "score_log1p_diff": 1.8763, "mean_log1p_expr": 2.0182, "detect_fraction": 0.9773 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "rank": 2, "gene": "NKG7", "score_log1p_diff": 1.809, "mean_log1p_expr": 3.2072, "detect_fraction": 0.9901 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "rank": 2, "gene": "NCOA4", "score_log1p_diff": 1.7955, "mean_log1p_expr": 2.0771, "detect_fraction": 0.9286 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "rank": 2, "gene": "IL32", "score_log1p_diff": 1.6412, "mean_log1p_expr": 2.5722, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "rank": 2, "gene": "CD8B", "score_log1p_diff": 1.3916, "mean_log1p_expr": 1.592, "detect_fraction": 0.9577 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_6", "rank": 2, "gene": "S100A9", "score_log1p_diff": 0.7061, "mean_log1p_expr": 2.0258, "detect_fraction": 0.9328 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_5", "rank": 3, "gene": "CST3", "score_log1p_diff": 2.641, "mean_log1p_expr": 3.8039, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_15", "rank": 3, "gene": "IFITM3", "score_log1p_diff": 2.5977, "mean_log1p_expr": 3.9346, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_19", "rank": 3, "gene": "IGKC", "score_log1p_diff": 2.4724, "mean_log1p_expr": 2.4837, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_23", "rank": 3, "gene": "TRAV38-2DV8", "score_log1p_diff": 2.3924, "mean_log1p_expr": 2.4097, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_1", "rank": 3, "gene": "LYZ", "score_log1p_diff": 2.3447, "mean_log1p_expr": 3.1755, "detect_fraction": 0.9951 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_18", "rank": 3, "gene": "HLA-DRA", "score_log1p_diff": 2.3284, "mean_log1p_expr": 3.5036, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_20", "rank": 3, "gene": "NKG7", "score_log1p_diff": 2.2866, "mean_log1p_expr": 3.7602, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_17", "rank": 3, "gene": "NKG7", "score_log1p_diff": 2.1887, "mean_log1p_expr": 3.6564, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_11", "rank": 3, "gene": "MS4A1", "score_log1p_diff": 2.1817, "mean_log1p_expr": 2.1876, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_8", "rank": 3, "gene": "IL32", "score_log1p_diff": 2.135, "mean_log1p_expr": 3.1128, "detect_fraction": 0.988 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_24", "rank": 3, "gene": "HMGN2", "score_log1p_diff": 2.123, "mean_log1p_expr": 2.9824, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_26", "rank": 3, "gene": "NKG7", "score_log1p_diff": 2.0684, "mean_log1p_expr": 3.5539, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_3", "rank": 3, "gene": "IFITM3", "score_log1p_diff": 2.0449, "mean_log1p_expr": 3.1841, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_27", "rank": 3, "gene": "ZEB2", "score_log1p_diff": 2.0252, "mean_log1p_expr": 2.8445, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_2", "rank": 3, "gene": "GZMB", "score_log1p_diff": 2.0189, "mean_log1p_expr": 2.4321, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_14", "rank": 3, "gene": "CCL5", "score_log1p_diff": 1.9404, "mean_log1p_expr": 3.1664, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_21", "rank": 3, "gene": "TRBV7-5", "score_log1p_diff": 1.9193, "mean_log1p_expr": 1.9224, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_25", "rank": 3, "gene": "TRAV1-2", "score_log1p_diff": 1.9117, "mean_log1p_expr": 1.9304, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_16", "rank": 3, "gene": "CCL5", "score_log1p_diff": 1.9082, "mean_log1p_expr": 3.151, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_10", "rank": 3, "gene": "IL32", "score_log1p_diff": 1.8759, "mean_log1p_expr": 2.8842, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_13", "rank": 3, "gene": "CCL5", "score_log1p_diff": 1.7332, "mean_log1p_expr": 2.9589, "detect_fraction": 1 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_7", "rank": 3, "gene": "CCL5", "score_log1p_diff": 1.705, "mean_log1p_expr": 2.8827, "detect_fraction": 0.9901 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_22", "rank": 3, "gene": "PF4", "score_log1p_diff": 1.631, "mean_log1p_expr": 1.6406, "detect_fraction": 0.8571 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_12", "rank": 3, "gene": "CD7", "score_log1p_diff": 1.5036, "mean_log1p_expr": 2.029, "detect_fraction": 0.9778 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_4", "rank": 3, "gene": "IL7R", "score_log1p_diff": 1.4927, "mean_log1p_expr": 1.6125, "detect_fraction": 0.8727 }, { "sample_id": "GC-035-03-1A", "cluster": "cluster_9", "rank": 3, "gene": "IL32", "score_log1p_diff": 1.3474, "mean_log1p_expr": 2.366, "detect_fraction": 0.9859 } ], "source_tables": { "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv", "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv", "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv", "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv" } }