{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "HNSCC-127-01-1A",
  "donor_id": "HNSCC-127-01-1A",
  "summary": {
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    "donor_id": "HNSCC-127-01-1A",
    "cancer_type": "HNSCC",
    "health_status": "Head and Neck Squamous Cell Carcinoma; Tumour",
    "tissue_or_cell_source": "Tumour",
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    "genes_nonzero_in_analyzed_cells": 26704,
    "mean_umi": 5126,
    "mean_genes": 1778,
    "mean_pct_mito": 5.237,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=HNSCC-127-01-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/HNSCC-127-01-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/HNSCC-127-01-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/HNSCC-127-01-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/HNSCC-127-01-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
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  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
