{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "PDAC-027-12-1A",
  "donor_id": "PDAC-027-12-1A",
  "summary": {
    "sample_id": "PDAC-027-12-1A",
    "donor_id": "PDAC-027-12-1A",
    "cancer_type": "PDAC",
    "health_status": "Pancreatic Ductal Adenocarcinoma; Tumour",
    "tissue_or_cell_source": "Tumour",
    "cells_in_umap_file": 3000,
    "cells_analyzed": 1999,
    "clusters": 10,
    "genes_read": 17989,
    "genes_nonzero_in_analyzed_cells": 17573,
    "mean_umi": "",
    "mean_genes": 1421,
    "mean_pct_mito": "",
    "matrix_status": "Matrix incomplete; redownload required",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=PDAC-027-12-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/PDAC-027-12-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PDAC-027-12-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PDAC-027-12-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/PDAC-027-12-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "cells": 381,
      "mean_umi": "",
      "median_genes": 961,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "cells": 335,
      "mean_umi": "",
      "median_genes": 1398,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "cells": 305,
      "mean_umi": "",
      "median_genes": 853,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "cells": 223,
      "mean_umi": "",
      "median_genes": 597,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "cells": 202,
      "mean_umi": "",
      "median_genes": 1917,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "cells": 198,
      "mean_umi": "",
      "median_genes": 2279.5,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "cells": 146,
      "mean_umi": "",
      "median_genes": 1726.5,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "cells": 111,
      "mean_umi": "",
      "median_genes": 1676,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "cells": 83,
      "mean_umi": "",
      "median_genes": 1485,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "cells": 15,
      "mean_umi": "",
      "median_genes": 1994,
      "mean_pct_mito": ""
    }
  ],
  "program_scores": [
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.8912
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.7358
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.4929
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.8725
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.8377
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7262
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7256
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.6806
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.5013
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.4064
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1113
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0774
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0752
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0611
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0548
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.048
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0315
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.031
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0292
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0173
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.5601
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.1791
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.1625
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0855
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0588
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0584
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0459
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0454
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0408
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0343
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.6561
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.2611
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0972
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.05
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0497
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0456
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0444
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.03
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0293
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.024
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.3762
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.5578
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1786
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.132
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1119
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.098
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.089
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0736
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0683
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0626
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.7978
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.1188
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4973
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4575
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4452
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3435
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2682
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2445
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2365
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2077
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 1.0903
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.3559
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.3477
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0956
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0896
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0834
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0552
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0539
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0499
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.045
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.6919
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.4472
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.2634
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.1806
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.121
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.098
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0885
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0882
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.08
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0518
    }
  ],
  "program_summary": [
    {
      "program": "B_plasma",
      "cluster_count": 10,
      "mean_score": 0.987,
      "max_score": 1.8912,
      "mean_genes_used": 8
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 10,
      "mean_score": 0.5617,
      "max_score": 1.7978,
      "mean_genes_used": 9
    },
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 10,
      "mean_score": 0.2748,
      "max_score": 1.3762,
      "mean_genes_used": 8
    },
    {
      "program": "Proliferation",
      "cluster_count": 10,
      "mean_score": 0.2267,
      "max_score": 1.0903,
      "mean_genes_used": 5
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 10,
      "mean_score": 0.2111,
      "max_score": 0.6919,
      "mean_genes_used": 9
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 10,
      "mean_score": 0.1287,
      "max_score": 0.6561,
      "mean_genes_used": 7
    },
    {
      "program": "Endothelial",
      "cluster_count": 10,
      "mean_score": 0.1271,
      "max_score": 0.5601,
      "mean_genes_used": 6
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 10,
      "mean_score": 0.0537,
      "max_score": 0.1113,
      "mean_genes_used": 8
    }
  ],
  "top_markers": [
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "PRSS2",
      "score_log1p_diff": 5.956,
      "mean_log1p_expr": 6.1644,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.5298,
      "mean_log1p_expr": 4.3161,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "FTL",
      "score_log1p_diff": 3.5099,
      "mean_log1p_expr": 5.8341,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "HMGB2",
      "score_log1p_diff": 2.1476,
      "mean_log1p_expr": 2.656,
      "detect_fraction": 0.8889
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "CD79B",
      "score_log1p_diff": 1.8265,
      "mean_log1p_expr": 2.2269,
      "detect_fraction": 0.988
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "MS4A1",
      "score_log1p_diff": 1.7278,
      "mean_log1p_expr": 2.0962,
      "detect_fraction": 0.9189
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 1.6511,
      "mean_log1p_expr": 1.9355,
      "detect_fraction": 0.8131
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "S100A8",
      "score_log1p_diff": 1.646,
      "mean_log1p_expr": 2.0111,
      "detect_fraction": 0.7164
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "LTB",
      "score_log1p_diff": 0.984,
      "mean_log1p_expr": 1.6331,
      "detect_fraction": 0.9108
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "LUM",
      "score_log1p_diff": 0.6904,
      "mean_log1p_expr": 0.7912,
      "detect_fraction": 0.2556
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "REG1A",
      "score_log1p_diff": 5.8248,
      "mean_log1p_expr": 6.2307,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "APOE",
      "score_log1p_diff": 3.0862,
      "mean_log1p_expr": 3.7109,
      "detect_fraction": 0.9589
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "RGS5",
      "score_log1p_diff": 2.8409,
      "mean_log1p_expr": 2.9585,
      "detect_fraction": 0.9109
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "TUBA1B",
      "score_log1p_diff": 2.1454,
      "mean_log1p_expr": 2.8654,
      "detect_fraction": 0.9747
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "LTB",
      "score_log1p_diff": 1.7366,
      "mean_log1p_expr": 2.5011,
      "detect_fraction": 0.9518
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "CD79A",
      "score_log1p_diff": 1.6845,
      "mean_log1p_expr": 2.1189,
      "detect_fraction": 0.9099
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "S100A9",
      "score_log1p_diff": 1.5767,
      "mean_log1p_expr": 2.0861,
      "detect_fraction": 0.7791
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "GZMA",
      "score_log1p_diff": 0.9402,
      "mean_log1p_expr": 1.1097,
      "detect_fraction": 0.7148
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "RPS29",
      "score_log1p_diff": 0.7779,
      "mean_log1p_expr": 3.3087,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "DCN",
      "score_log1p_diff": 0.5429,
      "mean_log1p_expr": 0.7047,
      "detect_fraction": 0.2646
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "CTRB2",
      "score_log1p_diff": 5.7772,
      "mean_log1p_expr": 6.0149,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "FCER1G",
      "score_log1p_diff": 2.9658,
      "mean_log1p_expr": 3.4903,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "CALD1",
      "score_log1p_diff": 2.6464,
      "mean_log1p_expr": 2.8675,
      "detect_fraction": 0.995
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "STMN1",
      "score_log1p_diff": 1.9633,
      "mean_log1p_expr": 2.2934,
      "detect_fraction": 0.8737
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "CD79A",
      "score_log1p_diff": 1.6599,
      "mean_log1p_expr": 2.119,
      "detect_fraction": 0.9518
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "HLA-DRA",
      "score_log1p_diff": 1.5773,
      "mean_log1p_expr": 3.3278,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "LYZ",
      "score_log1p_diff": 1.3502,
      "mean_log1p_expr": 1.7658,
      "detect_fraction": 0.7493
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "CCL4",
      "score_log1p_diff": 0.836,
      "mean_log1p_expr": 0.9933,
      "detect_fraction": 0.6754
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "RPS27",
      "score_log1p_diff": 0.7263,
      "mean_log1p_expr": 3.8986,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "SFRP2",
      "score_log1p_diff": 0.4684,
      "mean_log1p_expr": 0.5064,
      "detect_fraction": 0.1749
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "REG1B",
      "score_log1p_diff": 5.4838,
      "mean_log1p_expr": 5.592,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "CTSB",
      "score_log1p_diff": 2.8696,
      "mean_log1p_expr": 3.3839,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "ADIRF",
      "score_log1p_diff": 2.3822,
      "mean_log1p_expr": 2.5029,
      "detect_fraction": 0.9851
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "HMGN2",
      "score_log1p_diff": 1.8987,
      "mean_log1p_expr": 2.6718,
      "detect_fraction": 0.9697
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "CD74",
      "score_log1p_diff": 1.5549,
      "mean_log1p_expr": 3.6832,
      "detect_fraction": 0.973
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "TCL1A",
      "score_log1p_diff": 1.4149,
      "mean_log1p_expr": 1.6541,
      "detect_fraction": 0.8795
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "NEAT1",
      "score_log1p_diff": 1.3437,
      "mean_log1p_expr": 2.6245,
      "detect_fraction": 0.994
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "IL32",
      "score_log1p_diff": 0.8252,
      "mean_log1p_expr": 1.5415,
      "detect_fraction": 0.8393
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "IL32",
      "score_log1p_diff": 0.7165,
      "mean_log1p_expr": 1.4221,
      "detect_fraction": 0.727
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "COL1A2",
      "score_log1p_diff": 0.4377,
      "mean_log1p_expr": 0.7027,
      "detect_fraction": 0.2556
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 5,
      "gene": "PRSS1",
      "score_log1p_diff": 5.0975,
      "mean_log1p_expr": 5.1857,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 5,
      "gene": "APOC1",
      "score_log1p_diff": 2.8102,
      "mean_log1p_expr": 3.0643,
      "detect_fraction": 0.911
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 5,
      "gene": "TAGLN",
      "score_log1p_diff": 2.3654,
      "mean_log1p_expr": 2.5351,
      "detect_fraction": 0.9059
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 5,
      "gene": "TUBB",
      "score_log1p_diff": 1.8406,
      "mean_log1p_expr": 2.3791,
      "detect_fraction": 0.9495
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 5,
      "gene": "CORO1A",
      "score_log1p_diff": 1.4813,
      "mean_log1p_expr": 2.4605,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 5,
      "gene": "ISG20",
      "score_log1p_diff": 1.3859,
      "mean_log1p_expr": 1.774,
      "detect_fraction": 0.988
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 5,
      "gene": "S100A6",
      "score_log1p_diff": 1.2135,
      "mean_log1p_expr": 2.4762,
      "detect_fraction": 0.9672
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 5,
      "gene": "GZMH",
      "score_log1p_diff": 0.7323,
      "mean_log1p_expr": 0.82,
      "detect_fraction": 0.5902
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 5,
      "gene": "TRAC",
      "score_log1p_diff": 0.6865,
      "mean_log1p_expr": 1.1215,
      "detect_fraction": 0.7113
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 5,
      "gene": "C7",
      "score_log1p_diff": 0.4279,
      "mean_log1p_expr": 0.4878,
      "detect_fraction": 0.1883
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 6,
      "gene": "CELA3A",
      "score_log1p_diff": 5.0902,
      "mean_log1p_expr": 5.1441,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 6,
      "gene": "FTH1",
      "score_log1p_diff": 2.7002,
      "mean_log1p_expr": 5.1905,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 6,
      "gene": "ACTA2",
      "score_log1p_diff": 2.3494,
      "mean_log1p_expr": 2.5463,
      "detect_fraction": 0.9406
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 6,
      "gene": "HMGB1",
      "score_log1p_diff": 1.834,
      "mean_log1p_expr": 3.094,
      "detect_fraction": 0.9747
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 6,
      "gene": "SMIM14",
      "score_log1p_diff": 1.3739,
      "mean_log1p_expr": 1.7761,
      "detect_fraction": 0.8916
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 6,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 1.3591,
      "mean_log1p_expr": 2.6269,
      "detect_fraction": 0.964
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 6,
      "gene": "SRGN",
      "score_log1p_diff": 1.1975,
      "mean_log1p_expr": 2.2883,
      "detect_fraction": 0.9731
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 6,
      "gene": "GZMB",
      "score_log1p_diff": 0.6809,
      "mean_log1p_expr": 0.801,
      "detect_fraction": 0.5344
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 6,
      "gene": "RPS12",
      "score_log1p_diff": 0.6731,
      "mean_log1p_expr": 3.1769,
      "detect_fraction": 0.9974
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 6,
      "gene": "COL1A1",
      "score_log1p_diff": 0.4201,
      "mean_log1p_expr": 0.5921,
      "detect_fraction": 0.2511
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 7,
      "gene": "SPINK1",
      "score_log1p_diff": 4.9367,
      "mean_log1p_expr": 5.1219,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 7,
      "gene": "IFI30",
      "score_log1p_diff": 2.6684,
      "mean_log1p_expr": 3.2513,
      "detect_fraction": 0.9932
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 7,
      "gene": "SPARCL1",
      "score_log1p_diff": 2.2295,
      "mean_log1p_expr": 2.5848,
      "detect_fraction": 0.9901
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 7,
      "gene": "H2AFZ",
      "score_log1p_diff": 1.8281,
      "mean_log1p_expr": 2.6229,
      "detect_fraction": 0.9596
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 7,
      "gene": "ACTB",
      "score_log1p_diff": 1.3436,
      "mean_log1p_expr": 4.4436,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 7,
      "gene": "CD74",
      "score_log1p_diff": 1.3378,
      "mean_log1p_expr": 3.4969,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 7,
      "gene": "DUSP1",
      "score_log1p_diff": 1.1443,
      "mean_log1p_expr": 1.6149,
      "detect_fraction": 0.8597
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 7,
      "gene": "RPS3",
      "score_log1p_diff": 0.6645,
      "mean_log1p_expr": 2.9599,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 7,
      "gene": "GZMK",
      "score_log1p_diff": 0.6511,
      "mean_log1p_expr": 0.731,
      "detect_fraction": 0.5148
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 7,
      "gene": "COL3A1",
      "score_log1p_diff": 0.4164,
      "mean_log1p_expr": 0.7379,
      "detect_fraction": 0.2915
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_10",
      "rank": 8,
      "gene": "CTRB1",
      "score_log1p_diff": 4.8403,
      "mean_log1p_expr": 4.8976,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_2",
      "rank": 8,
      "gene": "TYROBP",
      "score_log1p_diff": 2.621,
      "mean_log1p_expr": 3.1107,
      "detect_fraction": 0.9863
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_9",
      "rank": 8,
      "gene": "IFITM3",
      "score_log1p_diff": 2.098,
      "mean_log1p_expr": 2.7976,
      "detect_fraction": 0.9901
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_5",
      "rank": 8,
      "gene": "HIST1H4C",
      "score_log1p_diff": 1.6287,
      "mean_log1p_expr": 1.884,
      "detect_fraction": 0.7626
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_1",
      "rank": 8,
      "gene": "ATP5MG",
      "score_log1p_diff": 1.3178,
      "mean_log1p_expr": 2.7856,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_4",
      "rank": 8,
      "gene": "MARCKSL1",
      "score_log1p_diff": 1.2969,
      "mean_log1p_expr": 1.7665,
      "detect_fraction": 0.9459
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_7",
      "rank": 8,
      "gene": "ZFP36",
      "score_log1p_diff": 1.1368,
      "mean_log1p_expr": 1.6366,
      "detect_fraction": 0.8597
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_8",
      "rank": 8,
      "gene": "RPL13A",
      "score_log1p_diff": 0.6186,
      "mean_log1p_expr": 3.4536,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_6",
      "rank": 8,
      "gene": "IGHG1",
      "score_log1p_diff": 0.5884,
      "mean_log1p_expr": 1.0345,
      "detect_fraction": 0.3934
    },
    {
      "sample_id": "PDAC-027-12-1A",
      "cluster": "cluster_3",
      "rank": 8,
      "gene": "MMP2",
      "score_log1p_diff": 0.4034,
      "mean_log1p_expr": 0.4814,
      "detect_fraction": 0.2242
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
