{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "PDAC-044-04-1A",
  "donor_id": "PDAC-044-04-1A",
  "summary": {
    "sample_id": "PDAC-044-04-1A",
    "donor_id": "PDAC-044-04-1A",
    "cancer_type": "PDAC",
    "health_status": "Pancreatic Ductal Adenocarcinoma; Tumour",
    "tissue_or_cell_source": "Tumour",
    "cells_in_umap_file": 3000,
    "cells_analyzed": 2000,
    "clusters": 10,
    "genes_read": 23275,
    "genes_nonzero_in_analyzed_cells": 20862,
    "mean_umi": "",
    "mean_genes": 1556,
    "mean_pct_mito": "",
    "matrix_status": "Matrix incomplete; redownload required",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=PDAC-044-04-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/PDAC-044-04-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PDAC-044-04-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PDAC-044-04-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/PDAC-044-04-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "cells": 360,
      "mean_umi": "",
      "median_genes": 1695.5,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "cells": 341,
      "mean_umi": "",
      "median_genes": 1755,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "cells": 298,
      "mean_umi": "",
      "median_genes": 1322,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "cells": 219,
      "mean_umi": "",
      "median_genes": 1483,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "cells": 181,
      "mean_umi": "",
      "median_genes": 453,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "cells": 170,
      "mean_umi": "",
      "median_genes": 729,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "cells": 150,
      "mean_umi": "",
      "median_genes": 1220.5,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "cells": 146,
      "mean_umi": "",
      "median_genes": 2997,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "cells": 76,
      "mean_umi": "",
      "median_genes": 1642.5,
      "mean_pct_mito": ""
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "cells": 59,
      "mean_umi": "",
      "median_genes": 642,
      "mean_pct_mito": ""
    }
  ],
  "program_scores": [
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.9735
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.5811
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.4659
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.3321
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.214
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.1674
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.1463
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.1353
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.1254
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 7,
      "mean_log1p_score": 0.105
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.2092
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1555
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1399
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1075
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1007
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0685
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0357
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0249
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0116
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0111
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.2157
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0829
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0539
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0532
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0475
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.038
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0293
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0159
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0115
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 6,
      "mean_log1p_score": 0.0074
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.3297
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.278
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.2284
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.1676
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.087
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0392
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0366
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0352
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0312
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 8,
      "mean_log1p_score": 0.0264
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.9189
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.2535
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.2311
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1932
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1778
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1145
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0949
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0916
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0789
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0738
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.8964
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.7328
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.5334
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4634
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4284
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2819
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2611
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2401
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1433
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1139
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.1337
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0616
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0418
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0315
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0215
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0195
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0165
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0128
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0.0047
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 5,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.5336
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.5065
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.472
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.244
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0225
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0196
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0193
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0176
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0159
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 9,
      "mean_log1p_score": 0.0135
    }
  ],
  "program_summary": [
    {
      "program": "Myeloid_APC",
      "cluster_count": 10,
      "mean_score": 0.5094,
      "max_score": 1.8964,
      "mean_genes_used": 9
    },
    {
      "program": "B_plasma",
      "cluster_count": 10,
      "mean_score": 0.3246,
      "max_score": 0.9735,
      "mean_genes_used": 7
    },
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 10,
      "mean_score": 0.3228,
      "max_score": 1.9189,
      "mean_genes_used": 8
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 10,
      "mean_score": 0.1864,
      "max_score": 0.5336,
      "mean_genes_used": 9
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 10,
      "mean_score": 0.1259,
      "max_score": 0.3297,
      "mean_genes_used": 8
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 10,
      "mean_score": 0.0865,
      "max_score": 0.2092,
      "mean_genes_used": 8
    },
    {
      "program": "Endothelial",
      "cluster_count": 10,
      "mean_score": 0.0555,
      "max_score": 0.2157,
      "mean_genes_used": 6
    },
    {
      "program": "Proliferation",
      "cluster_count": 10,
      "mean_score": 0.0344,
      "max_score": 0.1337,
      "mean_genes_used": 5
    }
  ],
  "top_markers": [
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "CXCL8",
      "score_log1p_diff": 3.3305,
      "mean_log1p_expr": 4.0734,
      "detect_fraction": 0.9824
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "COL1A1",
      "score_log1p_diff": 2.819,
      "mean_log1p_expr": 3.1714,
      "detect_fraction": 0.98
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.7768,
      "mean_log1p_expr": 3.508,
      "detect_fraction": 0.9247
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "CXCL8",
      "score_log1p_diff": 2.7651,
      "mean_log1p_expr": 3.7096,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 1.9718,
      "mean_log1p_expr": 2.8307,
      "detect_fraction": 0.9868
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "RPS27",
      "score_log1p_diff": 1.5861,
      "mean_log1p_expr": 3.6615,
      "detect_fraction": 0.9972
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "TNFAIP3",
      "score_log1p_diff": 1.1026,
      "mean_log1p_expr": 2.3332,
      "detect_fraction": 0.9635
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "BTG1",
      "score_log1p_diff": 0.9651,
      "mean_log1p_expr": 2.3697,
      "detect_fraction": 0.9677
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "SERPINA1",
      "score_log1p_diff": 0.5257,
      "mean_log1p_expr": 1.2663,
      "detect_fraction": 0.6275
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "IGKC",
      "score_log1p_diff": 0.4999,
      "mean_log1p_expr": 0.9067,
      "detect_fraction": 0.4033
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "CTSD",
      "score_log1p_diff": 2.605,
      "mean_log1p_expr": 3.1184,
      "detect_fraction": 0.9795
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "COL1A2",
      "score_log1p_diff": 2.5835,
      "mean_log1p_expr": 2.8807,
      "detect_fraction": 0.9933
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "CCL4L2",
      "score_log1p_diff": 2.5384,
      "mean_log1p_expr": 3.0472,
      "detect_fraction": 0.9471
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "NAMPT",
      "score_log1p_diff": 2.4126,
      "mean_log1p_expr": 3.3519,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 1.7142,
      "mean_log1p_expr": 2.7226,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "RPS12",
      "score_log1p_diff": 1.5238,
      "mean_log1p_expr": 3.3802,
      "detect_fraction": 0.9944
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "FYN",
      "score_log1p_diff": 0.8174,
      "mean_log1p_expr": 1.6788,
      "detect_fraction": 0.8592
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "AL136456.1",
      "score_log1p_diff": 0.8097,
      "mean_log1p_expr": 1.0326,
      "detect_fraction": 0.5525
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "IGHG1",
      "score_log1p_diff": 0.4979,
      "mean_log1p_expr": 0.6207,
      "detect_fraction": 0.2099
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "GMDS",
      "score_log1p_diff": 0.4619,
      "mean_log1p_expr": 0.8107,
      "detect_fraction": 0.547
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "CD74",
      "score_log1p_diff": 2.5279,
      "mean_log1p_expr": 3.4169,
      "detect_fraction": 0.9247
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "COL3A1",
      "score_log1p_diff": 2.4836,
      "mean_log1p_expr": 2.699,
      "detect_fraction": 0.98
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "G0S2",
      "score_log1p_diff": 2.4111,
      "mean_log1p_expr": 2.7509,
      "detect_fraction": 0.9647
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "G0S2",
      "score_log1p_diff": 2.2758,
      "mean_log1p_expr": 2.7535,
      "detect_fraction": 0.9831
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "BANK1",
      "score_log1p_diff": 1.6504,
      "mean_log1p_expr": 1.6782,
      "detect_fraction": 0.9474
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "RPLP1",
      "score_log1p_diff": 1.5228,
      "mean_log1p_expr": 3.8011,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "MALAT1",
      "score_log1p_diff": 0.8167,
      "mean_log1p_expr": 5.0844,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "RORA",
      "score_log1p_diff": 0.7603,
      "mean_log1p_expr": 1.4523,
      "detect_fraction": 0.863
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "JCHAIN",
      "score_log1p_diff": 0.4755,
      "mean_log1p_expr": 0.5327,
      "detect_fraction": 0.1436
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "PTPRK",
      "score_log1p_diff": 0.4295,
      "mean_log1p_expr": 0.5947,
      "detect_fraction": 0.4094
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 2.5259,
      "mean_log1p_expr": 3.193,
      "detect_fraction": 0.8699
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "CCL3L1",
      "score_log1p_diff": 2.3077,
      "mean_log1p_expr": 2.6982,
      "detect_fraction": 0.9706
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "S100A9",
      "score_log1p_diff": 2.1634,
      "mean_log1p_expr": 2.4611,
      "detect_fraction": 0.9661
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "FN1",
      "score_log1p_diff": 2.1614,
      "mean_log1p_expr": 2.5664,
      "detect_fraction": 0.9933
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "RPL13",
      "score_log1p_diff": 1.52,
      "mean_log1p_expr": 3.6127,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 1.5153,
      "mean_log1p_expr": 2.3093,
      "detect_fraction": 0.9605
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "IL32",
      "score_log1p_diff": 0.8096,
      "mean_log1p_expr": 1.468,
      "detect_fraction": 0.8182
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "MALAT1",
      "score_log1p_diff": 0.7593,
      "mean_log1p_expr": 5.0831,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "AGR2",
      "score_log1p_diff": 0.4214,
      "mean_log1p_expr": 0.6181,
      "detect_fraction": 0.3993
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "IGHG4",
      "score_log1p_diff": 0.4204,
      "mean_log1p_expr": 0.5402,
      "detect_fraction": 0.2044
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 5,
      "gene": "PSAP",
      "score_log1p_diff": 2.3064,
      "mean_log1p_expr": 2.804,
      "detect_fraction": 0.9521
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 5,
      "gene": "NAMPT",
      "score_log1p_diff": 2.1254,
      "mean_log1p_expr": 2.9552,
      "detect_fraction": 0.9941
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 5,
      "gene": "AQP9",
      "score_log1p_diff": 2.011,
      "mean_log1p_expr": 2.2551,
      "detect_fraction": 0.9831
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 5,
      "gene": "SPARC",
      "score_log1p_diff": 1.8219,
      "mean_log1p_expr": 2.0169,
      "detect_fraction": 0.9067
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 5,
      "gene": "RPS18",
      "score_log1p_diff": 1.5039,
      "mean_log1p_expr": 3.4745,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 5,
      "gene": "HLA-DPB1",
      "score_log1p_diff": 1.4636,
      "mean_log1p_expr": 2.0183,
      "detect_fraction": 0.9605
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 5,
      "gene": "HLA-A",
      "score_log1p_diff": 0.7818,
      "mean_log1p_expr": 2.6204,
      "detect_fraction": 0.9795
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 5,
      "gene": "IL7R",
      "score_log1p_diff": 0.7507,
      "mean_log1p_expr": 1.3458,
      "detect_fraction": 0.8356
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 5,
      "gene": "KRT8",
      "score_log1p_diff": 0.4208,
      "mean_log1p_expr": 0.5941,
      "detect_fraction": 0.4295
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 5,
      "gene": "IFI27",
      "score_log1p_diff": 0.4051,
      "mean_log1p_expr": 0.8395,
      "detect_fraction": 0.6464
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 6,
      "gene": "CTSB",
      "score_log1p_diff": 2.2962,
      "mean_log1p_expr": 2.6696,
      "detect_fraction": 0.9041
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 6,
      "gene": "DOCK4",
      "score_log1p_diff": 1.9832,
      "mean_log1p_expr": 2.522,
      "detect_fraction": 0.9661
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 6,
      "gene": "DOCK4",
      "score_log1p_diff": 1.8662,
      "mean_log1p_expr": 2.3048,
      "detect_fraction": 0.9235
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 6,
      "gene": "SFRP2",
      "score_log1p_diff": 1.7583,
      "mean_log1p_expr": 1.8126,
      "detect_fraction": 0.8467
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 6,
      "gene": "RPS29",
      "score_log1p_diff": 1.4987,
      "mean_log1p_expr": 3.4042,
      "detect_fraction": 1
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 6,
      "gene": "IGKC",
      "score_log1p_diff": 1.4429,
      "mean_log1p_expr": 1.8401,
      "detect_fraction": 0.7895
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 6,
      "gene": "NIBAN1",
      "score_log1p_diff": 0.7555,
      "mean_log1p_expr": 1.4412,
      "detect_fraction": 0.8299
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 6,
      "gene": "FYN",
      "score_log1p_diff": 0.7279,
      "mean_log1p_expr": 1.6489,
      "detect_fraction": 0.9406
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 6,
      "gene": "KRT19",
      "score_log1p_diff": 0.4195,
      "mean_log1p_expr": 0.6505,
      "detect_fraction": 0.4295
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 6,
      "gene": "MZB1",
      "score_log1p_diff": 0.3952,
      "mean_log1p_expr": 0.4078,
      "detect_fraction": 0.1436
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 7,
      "gene": "LYZ",
      "score_log1p_diff": 2.2584,
      "mean_log1p_expr": 3.086,
      "detect_fraction": 0.8836
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 7,
      "gene": "LCP2",
      "score_log1p_diff": 1.8819,
      "mean_log1p_expr": 2.3253,
      "detect_fraction": 0.9831
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 7,
      "gene": "C15orf48",
      "score_log1p_diff": 1.7979,
      "mean_log1p_expr": 2.0111,
      "detect_fraction": 0.8824
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 7,
      "gene": "CALD1",
      "score_log1p_diff": 1.7559,
      "mean_log1p_expr": 1.8651,
      "detect_fraction": 0.8333
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 7,
      "gene": "RPS27A",
      "score_log1p_diff": 1.4717,
      "mean_log1p_expr": 3.1794,
      "detect_fraction": 0.9972
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 7,
      "gene": "MEF2C",
      "score_log1p_diff": 1.2679,
      "mean_log1p_expr": 1.3896,
      "detect_fraction": 0.8947
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 7,
      "gene": "B2M",
      "score_log1p_diff": 0.7027,
      "mean_log1p_expr": 3.7868,
      "detect_fraction": 0.9883
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 7,
      "gene": "STAT4",
      "score_log1p_diff": 0.6946,
      "mean_log1p_expr": 1.329,
      "detect_fraction": 0.8174
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 7,
      "gene": "MUC1",
      "score_log1p_diff": 0.4169,
      "mean_log1p_expr": 0.5982,
      "detect_fraction": 0.4128
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 7,
      "gene": "KRT19",
      "score_log1p_diff": 0.3626,
      "mean_log1p_expr": 0.6233,
      "detect_fraction": 0.4586
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_10",
      "rank": 8,
      "gene": "C1QA",
      "score_log1p_diff": 2.2581,
      "mean_log1p_expr": 2.4467,
      "detect_fraction": 0.8356
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_6",
      "rank": 8,
      "gene": "IL1B",
      "score_log1p_diff": 1.8353,
      "mean_log1p_expr": 2.2412,
      "detect_fraction": 0.9492
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_9",
      "rank": 8,
      "gene": "IGFBP7",
      "score_log1p_diff": 1.707,
      "mean_log1p_expr": 1.867,
      "detect_fraction": 0.8467
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_7",
      "rank": 8,
      "gene": "BCL2A1",
      "score_log1p_diff": 1.6288,
      "mean_log1p_expr": 1.9063,
      "detect_fraction": 0.9176
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_8",
      "rank": 8,
      "gene": "RPL34",
      "score_log1p_diff": 1.4474,
      "mean_log1p_expr": 3.026,
      "detect_fraction": 0.9944
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_2",
      "rank": 8,
      "gene": "RPS23",
      "score_log1p_diff": 1.2254,
      "mean_log1p_expr": 3.0047,
      "detect_fraction": 0.9737
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_5",
      "rank": 8,
      "gene": "RPS27",
      "score_log1p_diff": 0.6919,
      "mean_log1p_expr": 2.9348,
      "detect_fraction": 0.9795
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_3",
      "rank": 8,
      "gene": "SKAP1",
      "score_log1p_diff": 0.6586,
      "mean_log1p_expr": 1.2073,
      "detect_fraction": 0.8128
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_4",
      "rank": 8,
      "gene": "INPP4B",
      "score_log1p_diff": 0.4056,
      "mean_log1p_expr": 0.81,
      "detect_fraction": 0.6477
    },
    {
      "sample_id": "PDAC-044-04-1A",
      "cluster": "cluster_1",
      "rank": 8,
      "gene": "IGHA1",
      "score_log1p_diff": 0.3529,
      "mean_log1p_expr": 0.4674,
      "detect_fraction": 0.1713
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}
