{ "generated_at": "2026-07-09 12:54:49 +0800", "dataset_id": "ds-cancerscem-2", "dataset_name": "CancerSCEM 2.0", "sample_id": "PDAC-046-08-1A", "donor_id": "PDAC-046-08-1A", "summary": { "sample_id": "PDAC-046-08-1A", "donor_id": "PDAC-046-08-1A", "cancer_type": "PDAC", "health_status": "Pancreatic Ductal Adenocarcinoma; Normal", "tissue_or_cell_source": "Normal", "cells_in_umap_file": 5196, "cells_analyzed": 2000, "clusters": 22, "genes_read": 27509, "genes_nonzero_in_analyzed_cells": 25963, "mean_umi": 8164, "mean_genes": 2373, "mean_pct_mito": 4.158, "matrix_status": "Matrix available", "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=PDAC-046-08-1A", "umap_href": "IMG/umap/cancerscem-2/donor/PDAC-046-08-1A.png", "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PDAC-046-08-1A.umap.tsv.gz", "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PDAC-046-08-1A.summary.json" }, "visualizations": [ { "title": "Donor-level analysis panel", "href": "IMG/human-immune-analysis/cancerscem-deep/donor/PDAC-046-08-1A.analysis.png", "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes." } ], "cluster_qc": [ { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "cells": 428, "mean_umi": 4184.2243, "median_genes": 1709.5, "mean_pct_mito": 4.7938 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "cells": 233, "mean_umi": 5051.2918, "median_genes": 1879, "mean_pct_mito": 4.3804 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "cells": 204, "mean_umi": 8837.6716, "median_genes": 2854, "mean_pct_mito": 3.8523 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "cells": 176, "mean_umi": 13387.3352, "median_genes": 3709, "mean_pct_mito": 3.7035 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "cells": 130, "mean_umi": 11850.9462, "median_genes": 3234, "mean_pct_mito": 4.5108 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "cells": 124, "mean_umi": 17115.6855, "median_genes": 3331, "mean_pct_mito": 3.6417 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "cells": 111, "mean_umi": 5062.1622, "median_genes": 2177, "mean_pct_mito": 3.6553 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "cells": 87, "mean_umi": 4510.0805, "median_genes": 1866, "mean_pct_mito": 5.0779 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "cells": 85, "mean_umi": 6539.7412, "median_genes": 2340, "mean_pct_mito": 5.2544 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "cells": 81, "mean_umi": 15833.8272, "median_genes": 3626, "mean_pct_mito": 2.7314 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "cells": 74, "mean_umi": 10423.1081, "median_genes": 3308.5, "mean_pct_mito": 4.916 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "cells": 62, "mean_umi": 2490.5, "median_genes": 918, "mean_pct_mito": 1.424 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "cells": 45, "mean_umi": 4549.9111, "median_genes": 1792, "mean_pct_mito": 4.5168 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "cells": 38, "mean_umi": 22545.5, "median_genes": 2584.5, "mean_pct_mito": 1.9064 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "cells": 32, "mean_umi": 6444.125, "median_genes": 2261, "mean_pct_mito": 5.4735 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "cells": 24, "mean_umi": 6353.7083, "median_genes": 2576, "mean_pct_mito": 4.2162 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "cells": 16, "mean_umi": 5164.0625, "median_genes": 2312, "mean_pct_mito": 4.1139 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "cells": 11, "mean_umi": 1900.3636, "median_genes": 484, "mean_pct_mito": 2.2814 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "cells": 11, "mean_umi": 10512.2727, "median_genes": 2766, "mean_pct_mito": 3.2839 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "cells": 11, "mean_umi": 5402.3636, "median_genes": 2292, "mean_pct_mito": 3.7369 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "cells": 9, "mean_umi": 3745.6667, "median_genes": 819, "mean_pct_mito": 5.837 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "cells": 8, "mean_umi": 10914.75, "median_genes": 3262, "mean_pct_mito": 3.4373 } ], "program_scores": [ { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 2.1544 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.9895 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.6773 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.6264 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.5462 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.4132 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.3096 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2838 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.2436 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1932 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1871 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1626 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1549 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1529 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1503 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1338 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1302 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1292 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1289 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.1262 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.115 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "B_plasma", "genes_used": 8, "mean_log1p_score": 0.0664 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2676 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2229 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2205 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.2119 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1967 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1891 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1699 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1355 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1303 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.1214 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0927 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0665 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0596 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0473 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0381 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0327 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0316 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0297 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0141 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0108 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0.0096 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "Checkpoint_exhaustion", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 1.2243 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 1.0731 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1585 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1571 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1285 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1091 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1084 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1079 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.1012 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0877 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0614 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0503 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0478 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0408 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0398 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.036 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0224 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0208 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.02 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0193 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0143 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "Endothelial", "genes_used": 7, "mean_log1p_score": 0.0093 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.1529 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0565 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.036 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.034 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0315 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0233 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0226 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0181 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0129 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0107 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0042 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.004 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0031 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0031 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0028 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0026 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0.0018 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "Epithelial_tumor", "genes_used": 8, "mean_log1p_score": 0 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 2.3678 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 2.1881 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 1.7848 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 1.1605 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.6048 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.2146 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.1917 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.1188 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.1151 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.1115 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.1113 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.1102 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0958 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.093 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0872 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0834 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0801 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0763 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0762 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0731 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0695 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "Fibroblast_stroma", "genes_used": 8, "mean_log1p_score": 0.0648 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.8957 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 1.5691 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.6236 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.4814 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.3711 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.2312 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1542 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1493 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1476 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1305 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.1031 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0816 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.064 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0631 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0573 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0547 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0506 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0485 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0481 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0361 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0351 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "Myeloid_APC", "genes_used": 9, "mean_log1p_score": 0.0275 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.1019 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.096 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0697 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0673 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0673 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0488 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.047 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0435 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0428 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.042 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.041 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0395 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0355 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0339 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.033 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.025 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0248 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.023 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0218 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.018 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.013 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "Proliferation", "genes_used": 7, "mean_log1p_score": 0.0016 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 1.2711 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.745 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.5509 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.5266 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.4871 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.3877 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.047 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0467 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0368 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0352 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0335 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0316 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0292 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0211 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0208 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0145 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0133 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0122 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0087 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0063 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0.0022 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "program": "T_NK_cytotoxic", "genes_used": 10, "mean_log1p_score": 0 } ], "program_summary": [ { "program": "Fibroblast_stroma", "cluster_count": 22, "mean_score": 0.449, "max_score": 2.3678, "mean_genes_used": 8 }, { "program": "B_plasma", "cluster_count": 22, "mean_score": 0.367, "max_score": 2.1544, "mean_genes_used": 8 }, { "program": "Myeloid_APC", "cluster_count": 22, "mean_score": 0.292, "max_score": 1.8957, "mean_genes_used": 9 }, { "program": "T_NK_cytotoxic", "cluster_count": 22, "mean_score": 0.1967, "max_score": 1.2711, "mean_genes_used": 10 }, { "program": "Endothelial", "cluster_count": 22, "mean_score": 0.1654, "max_score": 1.2243, "mean_genes_used": 7 }, { "program": "Checkpoint_exhaustion", "cluster_count": 22, "mean_score": 0.1045, "max_score": 0.2676, "mean_genes_used": 8 }, { "program": "Proliferation", "cluster_count": 22, "mean_score": 0.0426, "max_score": 0.1019, "mean_genes_used": 7 }, { "program": "Epithelial_tumor", "cluster_count": 22, "mean_score": 0.0191, "max_score": 0.1529, "mean_genes_used": 8 } ], "top_markers": [ { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "rank": 1, "gene": "APOD", "score_log1p_diff": 5.4297, "mean_log1p_expr": 5.7787, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "rank": 1, "gene": "CXCL8", "score_log1p_diff": 4.5045, "mean_log1p_expr": 5.0324, "detect_fraction": 0.9919 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "rank": 1, "gene": "IGKC", "score_log1p_diff": 4.4148, "mean_log1p_expr": 5.0366, "detect_fraction": 0.9211 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "rank": 1, "gene": "CFD", "score_log1p_diff": 4.249, "mean_log1p_expr": 4.4539, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "rank": 1, "gene": "TPSB2", "score_log1p_diff": 3.9926, "mean_log1p_expr": 4.0132, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "rank": 1, "gene": "TAGLN", "score_log1p_diff": 3.7946, "mean_log1p_expr": 4.1448, "detect_fraction": 0.9846 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "rank": 1, "gene": "MGP", "score_log1p_diff": 3.6268, "mean_log1p_expr": 4.4942, "detect_fraction": 0.9943 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "rank": 1, "gene": "HLA-DRA", "score_log1p_diff": 3.3076, "mean_log1p_expr": 4.2402, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "rank": 1, "gene": "GNLY", "score_log1p_diff": 3.1937, "mean_log1p_expr": 3.2458, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "rank": 1, "gene": "CDH19", "score_log1p_diff": 2.9493, "mean_log1p_expr": 2.9639, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "rank": 1, "gene": "CXCL8", "score_log1p_diff": 2.4416, "mean_log1p_expr": 3.1732, "detect_fraction": 0.9194 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "rank": 1, "gene": "PRKG1", "score_log1p_diff": 2.4311, "mean_log1p_expr": 2.8792, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "rank": 1, "gene": "CCL14", "score_log1p_diff": 2.3171, "mean_log1p_expr": 2.4306, "detect_fraction": 0.8108 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "rank": 1, "gene": "HLA-DRA", "score_log1p_diff": 2.2726, "mean_log1p_expr": 3.1235, "detect_fraction": 0.9765 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "rank": 1, "gene": "TTR", "score_log1p_diff": 2.2056, "mean_log1p_expr": 2.2708, "detect_fraction": 0.7273 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "rank": 1, "gene": "SPARCL1", "score_log1p_diff": 1.9856, "mean_log1p_expr": 2.8736, "detect_fraction": 0.9706 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "rank": 1, "gene": "THEMIS", "score_log1p_diff": 1.8753, "mean_log1p_expr": 2.0658, "detect_fraction": 0.9099 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "rank": 1, "gene": "AREG", "score_log1p_diff": 1.8543, "mean_log1p_expr": 2.2255, "detect_fraction": 0.7273 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "rank": 1, "gene": "PTPRC", "score_log1p_diff": 1.4102, "mean_log1p_expr": 2.4521, "detect_fraction": 0.9766 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "rank": 1, "gene": "IL7R", "score_log1p_diff": 1.384, "mean_log1p_expr": 1.7344, "detect_fraction": 0.8369 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "rank": 1, "gene": "CCL5", "score_log1p_diff": 1.2098, "mean_log1p_expr": 1.908, "detect_fraction": 0.954 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "rank": 1, "gene": "MX1", "score_log1p_diff": 1.1079, "mean_log1p_expr": 1.532, "detect_fraction": 0.9333 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "rank": 2, "gene": "CCL3", "score_log1p_diff": 4.3869, "mean_log1p_expr": 4.6614, "detect_fraction": 0.9839 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "rank": 2, "gene": "PTGDS", "score_log1p_diff": 4.0907, "mean_log1p_expr": 4.593, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "rank": 2, "gene": "DCN", "score_log1p_diff": 4.0452, "mean_log1p_expr": 4.575, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "rank": 2, "gene": "JCHAIN", "score_log1p_diff": 3.8695, "mean_log1p_expr": 3.9294, "detect_fraction": 0.9211 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "rank": 2, "gene": "C11orf96", "score_log1p_diff": 3.4605, "mean_log1p_expr": 4.2802, "detect_fraction": 0.9846 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "rank": 2, "gene": "DCN", "score_log1p_diff": 3.4166, "mean_log1p_expr": 3.8095, "detect_fraction": 0.9943 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "rank": 2, "gene": "CPA3", "score_log1p_diff": 3.1188, "mean_log1p_expr": 3.1234, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "rank": 2, "gene": "NRXN1", "score_log1p_diff": 2.9148, "mean_log1p_expr": 2.9218, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "rank": 2, "gene": "HLA-DPB1", "score_log1p_diff": 2.8083, "mean_log1p_expr": 3.6104, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "rank": 2, "gene": "GZMB", "score_log1p_diff": 2.3736, "mean_log1p_expr": 2.4919, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "rank": 2, "gene": "ZNF385D", "score_log1p_diff": 2.2396, "mean_log1p_expr": 2.4287, "detect_fraction": 0.8784 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "rank": 2, "gene": "INS", "score_log1p_diff": 2.1793, "mean_log1p_expr": 2.9421, "detect_fraction": 0.9091 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "rank": 2, "gene": "DOCK4", "score_log1p_diff": 2.1137, "mean_log1p_expr": 2.6675, "detect_fraction": 0.9516 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "rank": 2, "gene": "CD74", "score_log1p_diff": 1.9469, "mean_log1p_expr": 2.974, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "rank": 2, "gene": "CLMN", "score_log1p_diff": 1.9359, "mean_log1p_expr": 2.0931, "detect_fraction": 0.9167 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "rank": 2, "gene": "EPAS1", "score_log1p_diff": 1.8893, "mean_log1p_expr": 2.3659, "detect_fraction": 0.9608 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "rank": 2, "gene": "PARP8", "score_log1p_diff": 1.8677, "mean_log1p_expr": 2.613, "detect_fraction": 0.991 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "rank": 2, "gene": "CD74", "score_log1p_diff": 1.8401, "mean_log1p_expr": 2.9399, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "rank": 2, "gene": "CCL4", "score_log1p_diff": 1.3585, "mean_log1p_expr": 2.2562, "detect_fraction": 0.9276 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "rank": 2, "gene": "CXCR4", "score_log1p_diff": 1.2045, "mean_log1p_expr": 2.3187, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "rank": 2, "gene": "CXCR4", "score_log1p_diff": 1.1151, "mean_log1p_expr": 2.1517, "detect_fraction": 0.9742 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "rank": 2, "gene": "RNF213", "score_log1p_diff": 1.0603, "mean_log1p_expr": 1.6635, "detect_fraction": 0.8667 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "rank": 3, "gene": "IL1B", "score_log1p_diff": 4.2393, "mean_log1p_expr": 4.4462, "detect_fraction": 0.9677 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "rank": 3, "gene": "MGP", "score_log1p_diff": 3.9998, "mean_log1p_expr": 5.0243, "detect_fraction": 0.9877 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "rank": 3, "gene": "DCN", "score_log1p_diff": 3.3588, "mean_log1p_expr": 4.039, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "rank": 3, "gene": "ADIRF", "score_log1p_diff": 3.2803, "mean_log1p_expr": 3.5904, "detect_fraction": 0.9692 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "rank": 3, "gene": "IGLC2", "score_log1p_diff": 3.2233, "mean_log1p_expr": 3.5743, "detect_fraction": 0.7632 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "rank": 3, "gene": "LUM", "score_log1p_diff": 3.0271, "mean_log1p_expr": 3.3076, "detect_fraction": 0.9886 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "rank": 3, "gene": "TPSAB1", "score_log1p_diff": 3.027, "mean_log1p_expr": 3.0312, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "rank": 3, "gene": "C1QA", "score_log1p_diff": 2.7888, "mean_log1p_expr": 2.9795, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "rank": 3, "gene": "CRYAB", "score_log1p_diff": 2.5443, "mean_log1p_expr": 2.6929, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_17", "rank": 3, "gene": "NKG7", "score_log1p_diff": 2.1823, "mean_log1p_expr": 2.3956, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "rank": 3, "gene": "SPARCL1", "score_log1p_diff": 2.1087, "mean_log1p_expr": 3.1212, "detect_fraction": 0.9595 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "rank": 3, "gene": "S100A9", "score_log1p_diff": 2.0389, "mean_log1p_expr": 2.079, "detect_fraction": 0.9355 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "rank": 3, "gene": "DLC1", "score_log1p_diff": 1.9182, "mean_log1p_expr": 2.299, "detect_fraction": 0.9583 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "rank": 3, "gene": "PLCB1", "score_log1p_diff": 1.8806, "mean_log1p_expr": 2.2257, "detect_fraction": 0.9216 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_18", "rank": 3, "gene": "GCG", "score_log1p_diff": 1.8426, "mean_log1p_expr": 1.8927, "detect_fraction": 0.5455 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_19", "rank": 3, "gene": "AFF3", "score_log1p_diff": 1.8019, "mean_log1p_expr": 1.9585, "detect_fraction": 0.7273 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "rank": 3, "gene": "ARHGAP15", "score_log1p_diff": 1.7803, "mean_log1p_expr": 2.3508, "detect_fraction": 0.982 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_9", "rank": 3, "gene": "CD79A", "score_log1p_diff": 1.5037, "mean_log1p_expr": 1.531, "detect_fraction": 0.8706 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_1", "rank": 3, "gene": "CCL5", "score_log1p_diff": 1.3575, "mean_log1p_expr": 1.8179, "detect_fraction": 0.9439 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_2", "rank": 3, "gene": "PTPRC", "score_log1p_diff": 1.1125, "mean_log1p_expr": 2.3266, "detect_fraction": 0.9957 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_8", "rank": 3, "gene": "PTPRC", "score_log1p_diff": 1.0828, "mean_log1p_expr": 2.3794, "detect_fraction": 0.9655 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_13", "rank": 3, "gene": "ISG15", "score_log1p_diff": 1.0172, "mean_log1p_expr": 1.4189, "detect_fraction": 0.8444 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_6", "rank": 4, "gene": "HLA-DRA", "score_log1p_diff": 4.1166, "mean_log1p_expr": 4.8088, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_10", "rank": 4, "gene": "MT2A", "score_log1p_diff": 3.2092, "mean_log1p_expr": 5.2281, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_5", "rank": 4, "gene": "TPM2", "score_log1p_diff": 2.9816, "mean_log1p_expr": 3.2269, "detect_fraction": 0.9846 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_14", "rank": 4, "gene": "IGHG1", "score_log1p_diff": 2.8411, "mean_log1p_expr": 2.9144, "detect_fraction": 0.6053 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_4", "rank": 4, "gene": "C7", "score_log1p_diff": 2.8328, "mean_log1p_expr": 3.1199, "detect_fraction": 0.9716 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_21", "rank": 4, "gene": "CD74", "score_log1p_diff": 2.7326, "mean_log1p_expr": 3.8302, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_22", "rank": 4, "gene": "LUM", "score_log1p_diff": 2.6753, "mean_log1p_expr": 3.2115, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_20", "rank": 4, "gene": "ANK3", "score_log1p_diff": 2.3703, "mean_log1p_expr": 2.6449, "detect_fraction": 1 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_15", "rank": 4, "gene": "SLC24A3", "score_log1p_diff": 2.1754, "mean_log1p_expr": 2.2887, "detect_fraction": 0.9688 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_11", "rank": 4, "gene": "ACKR1", "score_log1p_diff": 2.1085, "mean_log1p_expr": 2.1667, "detect_fraction": 0.8514 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_3", "rank": 4, "gene": "PLPP1", "score_log1p_diff": 1.8688, "mean_log1p_expr": 2.2221, "detect_fraction": 0.9069 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_12", "rank": 4, "gene": "S100A8", "score_log1p_diff": 1.8415, "mean_log1p_expr": 1.8545, "detect_fraction": 0.8548 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_16", "rank": 4, "gene": "SOX5", "score_log1p_diff": 1.802, "mean_log1p_expr": 2.1828, "detect_fraction": 0.9167 }, { "sample_id": "PDAC-046-08-1A", "cluster": "cluster_7", "rank": 4, "gene": "CELF2", "score_log1p_diff": 1.765, "mean_log1p_expr": 2.5138, "detect_fraction": 1 } ], "source_tables": { "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv", "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv", "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv", "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv" } }