{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "PTC-069-03-1A",
  "donor_id": "PTC-069-03-1A",
  "summary": {
    "sample_id": "PTC-069-03-1A",
    "donor_id": "PTC-069-03-1A",
    "cancer_type": "PTC",
    "health_status": "Papillary Thyroid Carcinoma; Tumour",
    "tissue_or_cell_source": "Tumour",
    "cells_in_umap_file": 2831,
    "cells_analyzed": 2000,
    "clusters": 18,
    "genes_read": 26272,
    "genes_nonzero_in_analyzed_cells": 24668,
    "mean_umi": 7823,
    "mean_genes": 2684,
    "mean_pct_mito": 4.503,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=PTC-069-03-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/PTC-069-03-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PTC-069-03-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PTC-069-03-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/PTC-069-03-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "cells": 303,
      "mean_umi": 7994.9571,
      "median_genes": 2848,
      "mean_pct_mito": 4.9845
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "cells": 278,
      "mean_umi": 9260.8129,
      "median_genes": 3096,
      "mean_pct_mito": 4.7068
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "cells": 272,
      "mean_umi": 7579.1397,
      "median_genes": 2822.5,
      "mean_pct_mito": 5.0096
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "cells": 270,
      "mean_umi": 8257.3185,
      "median_genes": 2891,
      "mean_pct_mito": 4.6077
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "cells": 153,
      "mean_umi": 6726.4967,
      "median_genes": 2616,
      "mean_pct_mito": 4.7604
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "cells": 112,
      "mean_umi": 6416.1429,
      "median_genes": 2821,
      "mean_pct_mito": 4.4183
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "cells": 108,
      "mean_umi": 4107.3611,
      "median_genes": 1105.5,
      "mean_pct_mito": 2.5339
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "cells": 88,
      "mean_umi": 8231.0795,
      "median_genes": 2955,
      "mean_pct_mito": 3.8992
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "cells": 73,
      "mean_umi": 6040.5342,
      "median_genes": 2326,
      "mean_pct_mito": 4.6037
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "cells": 64,
      "mean_umi": 10670.4844,
      "median_genes": 3530,
      "mean_pct_mito": 4.8904
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "cells": 62,
      "mean_umi": 8850.6935,
      "median_genes": 3268.5,
      "mean_pct_mito": 5.5964
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "cells": 49,
      "mean_umi": 10137.1633,
      "median_genes": 3288,
      "mean_pct_mito": 4.277
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "cells": 40,
      "mean_umi": 12099.85,
      "median_genes": 3617.5,
      "mean_pct_mito": 4.0596
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "cells": 39,
      "mean_umi": 859.3846,
      "median_genes": 435,
      "mean_pct_mito": 3.8309
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "cells": 38,
      "mean_umi": 4494.2632,
      "median_genes": 1532.5,
      "mean_pct_mito": 0.3148
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "cells": 23,
      "mean_umi": 16017.3913,
      "median_genes": 373,
      "mean_pct_mito": 1.7787
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "cells": 14,
      "mean_umi": 6716.2143,
      "median_genes": 2292,
      "mean_pct_mito": 7.8307
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "cells": 14,
      "mean_umi": 8735.3571,
      "median_genes": 2955.5,
      "mean_pct_mito": 4.3263
    }
  ],
  "program_scores": [
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 2.1815
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.4966
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.6042
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.4275
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2637
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2618
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2396
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2312
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2197
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2019
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2013
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1726
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.1663
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0989
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0984
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0911
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.0633
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.05
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.8717
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.676
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.5431
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.4592
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.2703
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1675
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1542
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1279
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1251
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1087
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1046
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0801
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0698
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0495
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0479
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0308
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.02
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0022
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 1.3265
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.2252
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1663
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.158
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1454
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1304
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0681
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.057
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0354
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0331
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0287
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.026
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0245
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0228
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0213
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0182
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0079
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.5955
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.4006
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.1347
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0753
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.069
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0566
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0495
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0491
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0373
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0328
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0314
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0309
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0267
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0265
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0248
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0226
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0222
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0215
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 2.3597
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.4728
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.0271
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.3121
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.1395
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0775
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0575
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0574
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0545
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0538
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0476
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0445
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0392
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0371
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0342
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0334
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0323
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0316
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.6959
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.5382
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.3921
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.1061
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.103
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0947
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0848
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0611
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0608
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.057
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0568
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0539
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0466
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0449
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.037
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.032
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0165
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0161
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.2259
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1268
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1259
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1101
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1046
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0885
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0824
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0707
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0675
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0605
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0475
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0473
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0388
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0316
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0277
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0217
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0197
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0051
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.5385
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.3354
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.9123
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.7809
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.7301
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.7017
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.1546
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.1212
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0575
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0421
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0297
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0294
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0222
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0198
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0151
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0134
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.005
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0
    }
  ],
  "program_summary": [
    {
      "program": "B_plasma",
      "cluster_count": 18,
      "mean_score": 0.3927,
      "max_score": 2.1815,
      "mean_genes_used": 8
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 18,
      "mean_score": 0.3616,
      "max_score": 1.5385,
      "mean_genes_used": 10
    },
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 18,
      "mean_score": 0.3284,
      "max_score": 2.3597,
      "mean_genes_used": 8
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 18,
      "mean_score": 0.2499,
      "max_score": 1.6959,
      "mean_genes_used": 9
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 18,
      "mean_score": 0.2171,
      "max_score": 0.8717,
      "mean_genes_used": 8
    },
    {
      "program": "Endothelial",
      "cluster_count": 18,
      "mean_score": 0.1386,
      "max_score": 1.3265,
      "mean_genes_used": 7
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 18,
      "mean_score": 0.0948,
      "max_score": 0.5955,
      "mean_genes_used": 7
    },
    {
      "program": "Proliferation",
      "cluster_count": 18,
      "mean_score": 0.0723,
      "max_score": 0.2259,
      "mean_genes_used": 7
    }
  ],
  "top_markers": [
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "IGHG3",
      "score_log1p_diff": 5.9798,
      "mean_log1p_expr": 6.1436,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "rank": 1,
      "gene": "TPSB2",
      "score_log1p_diff": 4.1502,
      "mean_log1p_expr": 4.1527,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "MGP",
      "score_log1p_diff": 4.112,
      "mean_log1p_expr": 4.7605,
      "detect_fraction": 0.9844
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.6756,
      "mean_log1p_expr": 4.123,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "TAGLN",
      "score_log1p_diff": 3.5245,
      "mean_log1p_expr": 3.824,
      "detect_fraction": 0.9677
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.0304,
      "mean_log1p_expr": 3.7382,
      "detect_fraction": 0.9804
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "BANK1",
      "score_log1p_diff": 2.9186,
      "mean_log1p_expr": 2.9305,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "GNLY",
      "score_log1p_diff": 2.7449,
      "mean_log1p_expr": 2.9376,
      "detect_fraction": 0.9375
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "IFI30",
      "score_log1p_diff": 2.4744,
      "mean_log1p_expr": 2.591,
      "detect_fraction": 0.825
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "CXCL13",
      "score_log1p_diff": 2.3157,
      "mean_log1p_expr": 2.4031,
      "detect_fraction": 0.8977
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "IGFBP7",
      "score_log1p_diff": 2.2399,
      "mean_log1p_expr": 3.0541,
      "detect_fraction": 0.9554
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 2.1852,
      "mean_log1p_expr": 3.1089,
      "detect_fraction": 0.9784
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "TSC22D1",
      "score_log1p_diff": 2.0459,
      "mean_log1p_expr": 2.5448,
      "detect_fraction": 0.9474
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "CLU",
      "score_log1p_diff": 1.7863,
      "mean_log1p_expr": 2.3096,
      "detect_fraction": 0.9259
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "BATF",
      "score_log1p_diff": 1.7569,
      "mean_log1p_expr": 2.089,
      "detect_fraction": 0.9472
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "CXCR4",
      "score_log1p_diff": 1.1883,
      "mean_log1p_expr": 2.9399,
      "detect_fraction": 0.9519
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 1.1318,
      "mean_log1p_expr": 2.3179,
      "detect_fraction": 0.9178
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "CXCL14",
      "score_log1p_diff": 0.4826,
      "mean_log1p_expr": 0.5869,
      "detect_fraction": 0.359
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "IGKC",
      "score_log1p_diff": 5.6957,
      "mean_log1p_expr": 6.1036,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.7145,
      "mean_log1p_expr": 4.5352,
      "detect_fraction": 0.9844
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "rank": 2,
      "gene": "TPSAB1",
      "score_log1p_diff": 3.5289,
      "mean_log1p_expr": 3.5296,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.4435,
      "mean_log1p_expr": 4.2763,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 3.1484,
      "mean_log1p_expr": 4.149,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "RGS5",
      "score_log1p_diff": 2.9308,
      "mean_log1p_expr": 3.1716,
      "detect_fraction": 0.9281
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.7138,
      "mean_log1p_expr": 3.2322,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "NKG7",
      "score_log1p_diff": 2.4161,
      "mean_log1p_expr": 3.0357,
      "detect_fraction": 0.9816
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "HLA-DRA",
      "score_log1p_diff": 2.3214,
      "mean_log1p_expr": 2.8124,
      "detect_fraction": 0.925
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "PLVAP",
      "score_log1p_diff": 2.2029,
      "mean_log1p_expr": 2.2404,
      "detect_fraction": 0.9286
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "S100A13",
      "score_log1p_diff": 1.9232,
      "mean_log1p_expr": 2.1238,
      "detect_fraction": 0.9737
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "CCL4",
      "score_log1p_diff": 1.7992,
      "mean_log1p_expr": 2.8993,
      "detect_fraction": 0.9568
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "RGS1",
      "score_log1p_diff": 1.7265,
      "mean_log1p_expr": 2.7988,
      "detect_fraction": 0.9571
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "FN1",
      "score_log1p_diff": 1.5816,
      "mean_log1p_expr": 2.1952,
      "detect_fraction": 0.9074
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "TOX",
      "score_log1p_diff": 1.539,
      "mean_log1p_expr": 2.2822,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "ATP1B3",
      "score_log1p_diff": 1.0966,
      "mean_log1p_expr": 2.6074,
      "detect_fraction": 0.9111
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "JUN",
      "score_log1p_diff": 0.8817,
      "mean_log1p_expr": 3.0254,
      "detect_fraction": 0.9726
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "C3",
      "score_log1p_diff": 0.4535,
      "mean_log1p_expr": 0.5343,
      "detect_fraction": 0.5128
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "IGHG1",
      "score_log1p_diff": 5.1963,
      "mean_log1p_expr": 5.2561,
      "detect_fraction": 0.9565
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "APOE",
      "score_log1p_diff": 3.6851,
      "mean_log1p_expr": 4.2881,
      "detect_fraction": 0.9844
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "C1QA",
      "score_log1p_diff": 3.1158,
      "mean_log1p_expr": 3.1741,
      "detect_fraction": 0.9796
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "ACTA2",
      "score_log1p_diff": 3.0988,
      "mean_log1p_expr": 3.3497,
      "detect_fraction": 0.9677
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "rank": 3,
      "gene": "CPA3",
      "score_log1p_diff": 2.7171,
      "mean_log1p_expr": 2.7188,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "AFF3",
      "score_log1p_diff": 2.6785,
      "mean_log1p_expr": 2.7025,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "SPARCL1",
      "score_log1p_diff": 2.4332,
      "mean_log1p_expr": 2.8411,
      "detect_fraction": 0.9477
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "PLAUR",
      "score_log1p_diff": 2.2912,
      "mean_log1p_expr": 2.3864,
      "detect_fraction": 0.775
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "HSPG2",
      "score_log1p_diff": 2.1011,
      "mean_log1p_expr": 2.1614,
      "detect_fraction": 0.9018
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "CCL4",
      "score_log1p_diff": 1.8033,
      "mean_log1p_expr": 2.9083,
      "detect_fraction": 0.9338
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "NPC2",
      "score_log1p_diff": 1.7291,
      "mean_log1p_expr": 2.3431,
      "detect_fraction": 0.9737
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "IL32",
      "score_log1p_diff": 1.7137,
      "mean_log1p_expr": 3.1173,
      "detect_fraction": 0.9802
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "NR3C1",
      "score_log1p_diff": 1.4799,
      "mean_log1p_expr": 2.5734,
      "detect_fraction": 0.9886
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "GZMA",
      "score_log1p_diff": 1.4477,
      "mean_log1p_expr": 2.0413,
      "detect_fraction": 0.9388
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "TG",
      "score_log1p_diff": 1.3971,
      "mean_log1p_expr": 1.9406,
      "detect_fraction": 0.8889
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "RGS1",
      "score_log1p_diff": 1.0424,
      "mean_log1p_expr": 2.2355,
      "detect_fraction": 0.8815
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "CD69",
      "score_log1p_diff": 0.7686,
      "mean_log1p_expr": 2.0015,
      "detect_fraction": 0.9041
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "CFD",
      "score_log1p_diff": 0.4272,
      "mean_log1p_expr": 0.5007,
      "detect_fraction": 0.2821
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "IGHG4",
      "score_log1p_diff": 4.8215,
      "mean_log1p_expr": 4.9562,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "TIMP1",
      "score_log1p_diff": 3.2277,
      "mean_log1p_expr": 3.9904,
      "detect_fraction": 0.9844
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "C1QB",
      "score_log1p_diff": 3.0055,
      "mean_log1p_expr": 3.0614,
      "detect_fraction": 0.9796
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "SPARCL1",
      "score_log1p_diff": 2.9968,
      "mean_log1p_expr": 3.4979,
      "detect_fraction": 0.9839
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "CD83",
      "score_log1p_diff": 2.5817,
      "mean_log1p_expr": 3.0383,
      "detect_fraction": 0.9286
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "rank": 4,
      "gene": "HPGDS",
      "score_log1p_diff": 2.3558,
      "mean_log1p_expr": 2.3748,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "PRKG1",
      "score_log1p_diff": 2.2847,
      "mean_log1p_expr": 2.4983,
      "detect_fraction": 0.8889
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "LYZ",
      "score_log1p_diff": 2.2528,
      "mean_log1p_expr": 2.3169,
      "detect_fraction": 0.825
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "PTPRG",
      "score_log1p_diff": 2.0731,
      "mean_log1p_expr": 2.3798,
      "detect_fraction": 0.8482
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_15",
      "rank": 4,
      "gene": "PEBP1",
      "score_log1p_diff": 1.7223,
      "mean_log1p_expr": 2.3818,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "DUSP4",
      "score_log1p_diff": 1.6464,
      "mean_log1p_expr": 2.317,
      "detect_fraction": 0.9439
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "GZMH",
      "score_log1p_diff": 1.6079,
      "mean_log1p_expr": 2.0149,
      "detect_fraction": 0.9706
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "NKG7",
      "score_log1p_diff": 1.4316,
      "mean_log1p_expr": 2.1809,
      "detect_fraction": 0.946
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "SNX9",
      "score_log1p_diff": 1.406,
      "mean_log1p_expr": 2.4054,
      "detect_fraction": 0.9773
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "SERPINA1",
      "score_log1p_diff": 1.0675,
      "mean_log1p_expr": 1.3615,
      "detect_fraction": 0.7685
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "ZFP36L2",
      "score_log1p_diff": 1.041,
      "mean_log1p_expr": 2.8357,
      "detect_fraction": 0.9815
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "THEMIS",
      "score_log1p_diff": 0.729,
      "mean_log1p_expr": 1.1779,
      "detect_fraction": 0.7123
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_14",
      "rank": 4,
      "gene": "COL1A1",
      "score_log1p_diff": 0.4251,
      "mean_log1p_expr": 0.6719,
      "detect_fraction": 0.4359
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_11",
      "rank": 5,
      "gene": "CALD1",
      "score_log1p_diff": 2.9948,
      "mean_log1p_expr": 3.4318,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_10",
      "rank": 5,
      "gene": "COL1A2",
      "score_log1p_diff": 2.9561,
      "mean_log1p_expr": 3.1533,
      "detect_fraction": 0.9688
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_12",
      "rank": 5,
      "gene": "HLA-DPA1",
      "score_log1p_diff": 2.887,
      "mean_log1p_expr": 3.4581,
      "detect_fraction": 0.9796
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_17",
      "rank": 5,
      "gene": "CD74",
      "score_log1p_diff": 2.4551,
      "mean_log1p_expr": 3.5156,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_16",
      "rank": 5,
      "gene": "IGLC2",
      "score_log1p_diff": 2.4344,
      "mean_log1p_expr": 2.6091,
      "detect_fraction": 0.5217
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_5",
      "rank": 5,
      "gene": "CALD1",
      "score_log1p_diff": 2.216,
      "mean_log1p_expr": 2.5763,
      "detect_fraction": 0.9477
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_13",
      "rank": 5,
      "gene": "FCER1G",
      "score_log1p_diff": 2.1871,
      "mean_log1p_expr": 2.3179,
      "detect_fraction": 0.9
    },
    {
      "sample_id": "PTC-069-03-1A",
      "cluster": "cluster_18",
      "rank": 5,
      "gene": "MS4A2",
      "score_log1p_diff": 2.0318,
      "mean_log1p_expr": 2.0321,
      "detect_fraction": 1
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}