{
  "generated_at": "2026-07-09 12:54:49 +0800",
  "dataset_id": "ds-cancerscem-2",
  "dataset_name": "CancerSCEM 2.0",
  "sample_id": "PTC-069-05-1A",
  "donor_id": "PTC-069-05-1A",
  "summary": {
    "sample_id": "PTC-069-05-1A",
    "donor_id": "PTC-069-05-1A",
    "cancer_type": "PTC",
    "health_status": "Papillary Thyroid Carcinoma; Tumour",
    "tissue_or_cell_source": "Tumour",
    "cells_in_umap_file": 2856,
    "cells_analyzed": 1999,
    "clusters": 20,
    "genes_read": 27092,
    "genes_nonzero_in_analyzed_cells": 25564,
    "mean_umi": 8248,
    "mean_genes": 2302,
    "mean_pct_mito": 3.308,
    "matrix_status": "Matrix available",
    "detail_url": "human-immune-donor-detail.php?dataset_id=ds-cancerscem-2&donor_id=PTC-069-05-1A",
    "umap_href": "IMG/umap/cancerscem-2/donor/PTC-069-05-1A.png",
    "umap_coordinates_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PTC-069-05-1A.umap.tsv.gz",
    "umap_summary_url": "http://8.142.154.29/LACA/data/human_immune_atlas/cancerscem_2_umap/PTC-069-05-1A.summary.json"
  },
  "visualizations": [
    {
      "title": "Donor-level analysis panel",
      "href": "IMG/human-immune-analysis/cancerscem-deep/donor/PTC-069-05-1A.analysis.png",
      "description": "Cluster cell counts, cluster-by-program score heatmap, and top marker genes."
    }
  ],
  "cluster_qc": [
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "cells": 208,
      "mean_umi": 8930.9712,
      "median_genes": 2851,
      "mean_pct_mito": 3.2773
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "cells": 181,
      "mean_umi": 5911.3204,
      "median_genes": 2325,
      "mean_pct_mito": 3.8725
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "cells": 177,
      "mean_umi": 16901.5819,
      "median_genes": 2163,
      "mean_pct_mito": 2.4746
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "cells": 176,
      "mean_umi": 8134.2955,
      "median_genes": 2545,
      "mean_pct_mito": 3.9219
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "cells": 162,
      "mean_umi": 2404.0864,
      "median_genes": 853.5,
      "mean_pct_mito": 3.6148
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "cells": 139,
      "mean_umi": 3576.7914,
      "median_genes": 307,
      "mean_pct_mito": 1.2724
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "cells": 130,
      "mean_umi": 12571.0769,
      "median_genes": 4116,
      "mean_pct_mito": 4.664
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "cells": 127,
      "mean_umi": 9053.9606,
      "median_genes": 2925,
      "mean_pct_mito": 3.5746
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "cells": 111,
      "mean_umi": 6476.1351,
      "median_genes": 2251,
      "mean_pct_mito": 3.2867
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "cells": 96,
      "mean_umi": 7982,
      "median_genes": 2792,
      "mean_pct_mito": 3.6387
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "cells": 83,
      "mean_umi": 8761.1566,
      "median_genes": 2861,
      "mean_pct_mito": 2.6652
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "cells": 77,
      "mean_umi": 1378.2987,
      "median_genes": 543,
      "mean_pct_mito": 2.1926
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "cells": 70,
      "mean_umi": 10706.4143,
      "median_genes": 2961.5,
      "mean_pct_mito": 3.7692
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "cells": 66,
      "mean_umi": 11838.5,
      "median_genes": 3771,
      "mean_pct_mito": 4.5457
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "cells": 60,
      "mean_umi": 4315.8833,
      "median_genes": 809.5,
      "mean_pct_mito": 1.9594
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "cells": 53,
      "mean_umi": 7388.0943,
      "median_genes": 1240,
      "mean_pct_mito": 3.3831
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "cells": 47,
      "mean_umi": 18722.4894,
      "median_genes": 4255,
      "mean_pct_mito": 4.2863
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "cells": 20,
      "mean_umi": 744.45,
      "median_genes": 415.5,
      "mean_pct_mito": 2.4239
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "cells": 9,
      "mean_umi": 7336.6667,
      "median_genes": 2331,
      "mean_pct_mito": 5.6623
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "cells": 7,
      "mean_umi": 675.8571,
      "median_genes": 525,
      "mean_pct_mito": 1.7889
    }
  ],
  "program_scores": [
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 2.0398
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.6233
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 1.2764
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.8734
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.7372
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.5063
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.4372
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3764
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3661
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3632
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3599
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3497
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3344
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3332
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.3002
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2833
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2799
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2798
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2312
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "B_plasma",
      "genes_used": 8,
      "mean_log1p_score": 0.2158
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.6967
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.6711
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.6295
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.3395
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.2551
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1923
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1532
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1506
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1144
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1132
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.1045
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0782
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.077
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0648
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0286
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0285
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0169
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0169
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.013
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "Checkpoint_exhaustion",
      "genes_used": 8,
      "mean_log1p_score": 0.0124
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.9087
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1932
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1356
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.1354
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0961
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0789
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0776
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0352
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0326
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0315
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0283
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0266
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0248
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0176
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.017
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0151
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0144
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0121
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.011
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "Endothelial",
      "genes_used": 7,
      "mean_log1p_score": 0.0072
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.4453
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.2411
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.1908
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.1168
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0733
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.065
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0514
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0435
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0391
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.029
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0283
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0244
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.022
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0204
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0183
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0179
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0167
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0156
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0154
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "Epithelial_tumor",
      "genes_used": 7,
      "mean_log1p_score": 0.0124
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.3401
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 1.2062
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.9168
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.2198
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0779
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0477
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.047
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0456
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0432
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.039
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0368
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0363
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0359
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0319
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0314
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0303
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0302
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0297
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.026
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "Fibroblast_stroma",
      "genes_used": 8,
      "mean_log1p_score": 0.0193
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 1.7203
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.913
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.4252
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.2825
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.093
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0788
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0787
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0763
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0755
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0662
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0631
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.044
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0425
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0421
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0369
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0351
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0322
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0287
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0282
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "Myeloid_APC",
      "genes_used": 9,
      "mean_log1p_score": 0.0086
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.1018
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0994
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0892
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0841
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0819
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0792
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0769
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0737
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0632
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0555
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0555
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0531
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0484
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0438
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0411
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.033
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0322
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0149
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0141
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "Proliferation",
      "genes_used": 7,
      "mean_log1p_score": 0.0047
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 1.0025
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.8057
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.5387
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.5279
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4947
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.4358
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.1857
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0342
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0293
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0261
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0173
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0134
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0129
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0117
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0105
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0099
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0098
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0077
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0054
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "program": "T_NK_cytotoxic",
      "genes_used": 10,
      "mean_log1p_score": 0.0046
    }
  ],
  "program_summary": [
    {
      "program": "B_plasma",
      "cluster_count": 20,
      "mean_score": 0.5783,
      "max_score": 2.0398,
      "mean_genes_used": 8
    },
    {
      "program": "Fibroblast_stroma",
      "cluster_count": 20,
      "mean_score": 0.2146,
      "max_score": 1.3401,
      "mean_genes_used": 8
    },
    {
      "program": "T_NK_cytotoxic",
      "cluster_count": 20,
      "mean_score": 0.2092,
      "max_score": 1.0025,
      "mean_genes_used": 10
    },
    {
      "program": "Myeloid_APC",
      "cluster_count": 20,
      "mean_score": 0.2085,
      "max_score": 1.7203,
      "mean_genes_used": 9
    },
    {
      "program": "Checkpoint_exhaustion",
      "cluster_count": 20,
      "mean_score": 0.1878,
      "max_score": 0.6967,
      "mean_genes_used": 8
    },
    {
      "program": "Endothelial",
      "cluster_count": 20,
      "mean_score": 0.0949,
      "max_score": 0.9087,
      "mean_genes_used": 7
    },
    {
      "program": "Epithelial_tumor",
      "cluster_count": 20,
      "mean_score": 0.0743,
      "max_score": 0.4453,
      "mean_genes_used": 7
    },
    {
      "program": "Proliferation",
      "cluster_count": 20,
      "mean_score": 0.0573,
      "max_score": 0.1018,
      "mean_genes_used": 7
    }
  ],
  "top_markers": [
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "rank": 1,
      "gene": "IGKC",
      "score_log1p_diff": 4.2475,
      "mean_log1p_expr": 5.9039,
      "detect_fraction": 0.9944
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "rank": 1,
      "gene": "IGKC",
      "score_log1p_diff": 3.8533,
      "mean_log1p_expr": 5.6178,
      "detect_fraction": 0.9496
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "rank": 1,
      "gene": "RGS5",
      "score_log1p_diff": 3.7574,
      "mean_log1p_expr": 3.9571,
      "detect_fraction": 0.9615
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "rank": 1,
      "gene": "TPSB2",
      "score_log1p_diff": 3.7011,
      "mean_log1p_expr": 3.7011,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "rank": 1,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.5416,
      "mean_log1p_expr": 4.1367,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.5078,
      "mean_log1p_expr": 4.0422,
      "detect_fraction": 0.9362
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "rank": 1,
      "gene": "IGLC2",
      "score_log1p_diff": 3.1781,
      "mean_log1p_expr": 3.5732,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 3.0183,
      "mean_log1p_expr": 3.5295,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "rank": 1,
      "gene": "GNLY",
      "score_log1p_diff": 2.4704,
      "mean_log1p_expr": 2.5275,
      "detect_fraction": 0.8425
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "rank": 1,
      "gene": "IGFBP7",
      "score_log1p_diff": 2.3576,
      "mean_log1p_expr": 3.0071,
      "detect_fraction": 0.9434
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "rank": 1,
      "gene": "LDLRAD4",
      "score_log1p_diff": 2.1032,
      "mean_log1p_expr": 2.8372,
      "detect_fraction": 0.9952
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "rank": 1,
      "gene": "CXCL13",
      "score_log1p_diff": 1.9631,
      "mean_log1p_expr": 2.0144,
      "detect_fraction": 0.7952
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "rank": 1,
      "gene": "S100A6",
      "score_log1p_diff": 1.9328,
      "mean_log1p_expr": 2.9331,
      "detect_fraction": 0.9333
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "rank": 1,
      "gene": "HLA-DRA",
      "score_log1p_diff": 1.8486,
      "mean_log1p_expr": 2.3943,
      "detect_fraction": 0.961
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 1.811,
      "mean_log1p_expr": 2.4169,
      "detect_fraction": 0.9375
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "rank": 1,
      "gene": "FLT1",
      "score_log1p_diff": 1.6916,
      "mean_log1p_expr": 1.749,
      "detect_fraction": 0.7838
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "rank": 1,
      "gene": "IL7R",
      "score_log1p_diff": 1.6271,
      "mean_log1p_expr": 2.0243,
      "detect_fraction": 0.9432
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "rank": 1,
      "gene": "CXCL8",
      "score_log1p_diff": 1.31,
      "mean_log1p_expr": 1.409,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "rank": 1,
      "gene": "CCL5",
      "score_log1p_diff": 1.3006,
      "mean_log1p_expr": 1.8758,
      "detect_fraction": 0.8674
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "rank": 1,
      "gene": "TTN",
      "score_log1p_diff": 0.5109,
      "mean_log1p_expr": 0.7601,
      "detect_fraction": 0.4938
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "rank": 2,
      "gene": "IGHG1",
      "score_log1p_diff": 4.1925,
      "mean_log1p_expr": 4.988,
      "detect_fraction": 0.9774
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "rank": 2,
      "gene": "IGFBP7",
      "score_log1p_diff": 3.5988,
      "mean_log1p_expr": 4.0767,
      "detect_fraction": 0.9923
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "rank": 2,
      "gene": "IGHG1",
      "score_log1p_diff": 3.5726,
      "mean_log1p_expr": 4.4909,
      "detect_fraction": 0.9209
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "rank": 2,
      "gene": "CALD1",
      "score_log1p_diff": 3.2003,
      "mean_log1p_expr": 3.5616,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 3.1927,
      "mean_log1p_expr": 4.1822,
      "detect_fraction": 0.9787
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "rank": 2,
      "gene": "TPSAB1",
      "score_log1p_diff": 2.9364,
      "mean_log1p_expr": 2.9371,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "rank": 2,
      "gene": "CD74",
      "score_log1p_diff": 2.4308,
      "mean_log1p_expr": 3.4102,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "rank": 2,
      "gene": "IGHA2",
      "score_log1p_diff": 2.415,
      "mean_log1p_expr": 2.5087,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "rank": 2,
      "gene": "MGP",
      "score_log1p_diff": 2.2987,
      "mean_log1p_expr": 2.6576,
      "detect_fraction": 0.8679
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "rank": 2,
      "gene": "CCL5",
      "score_log1p_diff": 2.131,
      "mean_log1p_expr": 2.6886,
      "detect_fraction": 0.9843
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "rank": 2,
      "gene": "TSHZ2",
      "score_log1p_diff": 1.9157,
      "mean_log1p_expr": 2.4049,
      "detect_fraction": 0.9157
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "rank": 2,
      "gene": "IKZF2",
      "score_log1p_diff": 1.7836,
      "mean_log1p_expr": 1.9584,
      "detect_fraction": 0.8894
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "rank": 2,
      "gene": "FTL",
      "score_log1p_diff": 1.7073,
      "mean_log1p_expr": 3.4624,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "rank": 2,
      "gene": "TOX",
      "score_log1p_diff": 1.6783,
      "mean_log1p_expr": 2.1806,
      "detect_fraction": 0.9271
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "rank": 2,
      "gene": "PLCB1",
      "score_log1p_diff": 1.6552,
      "mean_log1p_expr": 1.8375,
      "detect_fraction": 0.7297
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "rank": 2,
      "gene": "BACH2",
      "score_log1p_diff": 1.5598,
      "mean_log1p_expr": 2.1668,
      "detect_fraction": 0.858
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "rank": 2,
      "gene": "THEMIS",
      "score_log1p_diff": 1.092,
      "mean_log1p_expr": 1.3569,
      "detect_fraction": 0.7459
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "rank": 2,
      "gene": "FN1",
      "score_log1p_diff": 0.9822,
      "mean_log1p_expr": 1.5712,
      "detect_fraction": 0.7833
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "rank": 2,
      "gene": "CCL4L2",
      "score_log1p_diff": 0.9698,
      "mean_log1p_expr": 1.08,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "rank": 2,
      "gene": "TNF",
      "score_log1p_diff": 0.4658,
      "mean_log1p_expr": 0.6684,
      "detect_fraction": 0.5
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "rank": 3,
      "gene": "IGHG4",
      "score_log1p_diff": 3.823,
      "mean_log1p_expr": 4.5117,
      "detect_fraction": 0.9661
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "rank": 3,
      "gene": "PRKG1",
      "score_log1p_diff": 3.4165,
      "mean_log1p_expr": 3.6219,
      "detect_fraction": 0.9923
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "rank": 3,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 3.1633,
      "mean_log1p_expr": 3.7984,
      "detect_fraction": 0.9362
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "rank": 3,
      "gene": "TAGLN",
      "score_log1p_diff": 2.9875,
      "mean_log1p_expr": 3.1509,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "rank": 3,
      "gene": "CPA3",
      "score_log1p_diff": 2.7716,
      "mean_log1p_expr": 2.7719,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "rank": 3,
      "gene": "IGHG4",
      "score_log1p_diff": 2.6327,
      "mean_log1p_expr": 3.4769,
      "detect_fraction": 0.9281
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "rank": 3,
      "gene": "JCHAIN",
      "score_log1p_diff": 2.3996,
      "mean_log1p_expr": 2.5436,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "rank": 3,
      "gene": "HLA-DRB1",
      "score_log1p_diff": 2.35,
      "mean_log1p_expr": 2.9772,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "rank": 3,
      "gene": "NR3C1",
      "score_log1p_diff": 1.9039,
      "mean_log1p_expr": 3.1154,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "rank": 3,
      "gene": "TIMP1",
      "score_log1p_diff": 1.8947,
      "mean_log1p_expr": 2.2996,
      "detect_fraction": 0.9057
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "rank": 3,
      "gene": "BATF",
      "score_log1p_diff": 1.7383,
      "mean_log1p_expr": 1.9879,
      "detect_fraction": 0.8894
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "rank": 3,
      "gene": "PTPRC",
      "score_log1p_diff": 1.6062,
      "mean_log1p_expr": 2.9297,
      "detect_fraction": 0.9896
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "rank": 3,
      "gene": "STAT4",
      "score_log1p_diff": 1.5177,
      "mean_log1p_expr": 2.4015,
      "detect_fraction": 0.9528
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "rank": 3,
      "gene": "C1QA",
      "score_log1p_diff": 1.5033,
      "mean_log1p_expr": 1.5964,
      "detect_fraction": 0.8182
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "rank": 3,
      "gene": "LDB2",
      "score_log1p_diff": 1.4961,
      "mean_log1p_expr": 1.6193,
      "detect_fraction": 0.6396
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "rank": 3,
      "gene": "PTPRC",
      "score_log1p_diff": 1.3458,
      "mean_log1p_expr": 2.6279,
      "detect_fraction": 0.9886
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "rank": 3,
      "gene": "PTPRC",
      "score_log1p_diff": 1.0445,
      "mean_log1p_expr": 2.3505,
      "detect_fraction": 0.9061
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "rank": 3,
      "gene": "AL078604.4",
      "score_log1p_diff": 0.9298,
      "mean_log1p_expr": 1.179,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "rank": 3,
      "gene": "S100A13",
      "score_log1p_diff": 0.8629,
      "mean_log1p_expr": 0.947,
      "detect_fraction": 0.65
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "rank": 3,
      "gene": "JUN",
      "score_log1p_diff": 0.3526,
      "mean_log1p_expr": 2.1455,
      "detect_fraction": 0.963
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_7",
      "rank": 4,
      "gene": "LHFPL6",
      "score_log1p_diff": 2.9452,
      "mean_log1p_expr": 3.203,
      "detect_fraction": 0.9923
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_14",
      "rank": 4,
      "gene": "SPARCL1",
      "score_log1p_diff": 2.9175,
      "mean_log1p_expr": 3.2491,
      "detect_fraction": 0.9848
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_3",
      "rank": 4,
      "gene": "IGHG3",
      "score_log1p_diff": 2.8443,
      "mean_log1p_expr": 3.2669,
      "detect_fraction": 0.904
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_17",
      "rank": 4,
      "gene": "HLA-DPB1",
      "score_log1p_diff": 2.8389,
      "mean_log1p_expr": 3.3313,
      "detect_fraction": 0.9574
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_19",
      "rank": 4,
      "gene": "ANXA1",
      "score_log1p_diff": 2.7151,
      "mean_log1p_expr": 3.5868,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_13",
      "rank": 4,
      "gene": "SIPA1L1",
      "score_log1p_diff": 2.3195,
      "mean_log1p_expr": 3.0651,
      "detect_fraction": 0.9857
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_11",
      "rank": 4,
      "gene": "LDLRAD4",
      "score_log1p_diff": 1.8711,
      "mean_log1p_expr": 2.7463,
      "detect_fraction": 0.9759
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_6",
      "rank": 4,
      "gene": "IGHG3",
      "score_log1p_diff": 1.7984,
      "mean_log1p_expr": 2.3478,
      "detect_fraction": 0.7626
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_1",
      "rank": 4,
      "gene": "NIBAN1",
      "score_log1p_diff": 1.7374,
      "mean_log1p_expr": 2.611,
      "detect_fraction": 0.9327
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_16",
      "rank": 4,
      "gene": "COL3A1",
      "score_log1p_diff": 1.706,
      "mean_log1p_expr": 1.8523,
      "detect_fraction": 0.7736
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_12",
      "rank": 4,
      "gene": "C1QB",
      "score_log1p_diff": 1.5,
      "mean_log1p_expr": 1.5904,
      "detect_fraction": 0.8831
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_9",
      "rank": 4,
      "gene": "TCF4",
      "score_log1p_diff": 1.4904,
      "mean_log1p_expr": 1.9324,
      "detect_fraction": 0.7838
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_8",
      "rank": 4,
      "gene": "PTPRC",
      "score_log1p_diff": 1.4888,
      "mean_log1p_expr": 2.7948,
      "detect_fraction": 0.9843
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_10",
      "rank": 4,
      "gene": "CBLB",
      "score_log1p_diff": 1.3822,
      "mean_log1p_expr": 2.4577,
      "detect_fraction": 0.9792
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_4",
      "rank": 4,
      "gene": "RORA",
      "score_log1p_diff": 1.3245,
      "mean_log1p_expr": 2.0588,
      "detect_fraction": 0.9432
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_18",
      "rank": 4,
      "gene": "IGLC3",
      "score_log1p_diff": 1.0777,
      "mean_log1p_expr": 1.4436,
      "detect_fraction": 0.95
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_15",
      "rank": 4,
      "gene": "LGALS3",
      "score_log1p_diff": 0.8462,
      "mean_log1p_expr": 1.2296,
      "detect_fraction": 0.7667
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_2",
      "rank": 4,
      "gene": "ANXA1",
      "score_log1p_diff": 0.8399,
      "mean_log1p_expr": 1.6477,
      "detect_fraction": 0.7845
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_20",
      "rank": 4,
      "gene": "AC008771.1",
      "score_log1p_diff": 0.8025,
      "mean_log1p_expr": 0.908,
      "detect_fraction": 1
    },
    {
      "sample_id": "PTC-069-05-1A",
      "cluster": "cluster_5",
      "rank": 4,
      "gene": "SAE1",
      "score_log1p_diff": 0.3428,
      "mean_log1p_expr": 0.6114,
      "detect_fraction": 0.5679
    }
  ],
  "source_tables": {
    "sample_index": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_sample_index.tsv",
    "cluster_qc": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_qc.tsv",
    "program_scores": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_program_scores.tsv",
    "cluster_markers": "data/human_immune_atlas/analysis/cancerscem_deep/cancerscem_cluster_markers.tsv"
  }
}