TFs Analyzed
94
Transcription factors profiled
Exploratory Modules Available
Analysis Results SP089
Published legacy analysis modules for the selected page.
๐ Species Level
Validated exploratory / stratified sample.
Artifact and provenance checks passed for the linked advanced-module package.
These tabs use a deterministic tissue x cell-type stratified sample
(n=8,062,
seed=20260808) and are descriptive cell-level analyses,
not donor-level inference. Cell communication, species-wide trajectory, and age association remain not computed.
Cell Communication
Not computed
TF Associations
Exploratory
Co-expression
Exploratory
Trajectory
Not computed
Marker Ranking
Exploratory
GO / KEGG
Not computed
ToppGene
Not computed
Motif
Not computed
Metabolism
Exploratory
Disease
Exploratory
Drug Analysis
Exploratory
Full Report
Exploratory TF-Target AssociationsPearson associations in the stratified sample; not causal regulatory inference
๐๏ธ
๐
TF-Target Pairs
945
Thresholded Pearson associations
Top TF Association Counts
E2F1
63 associations
FOS
103 associations
GATA4
53 associations
HNF4A
80 associations
RUNX1
190 associations
RUNX2
73 associations
SOX2
53 associations
SOX9
27 associations
STAT3
125 associations
TCF7
26 associations
TF Activity Heatmap
Z-score normalized TF expression across cell populations.
Exploratory TF-Target Association Network
Pearson TF-target associations in the stratified sample; not a causal regulatory network.
Gene Co-expression NetworkExpression-correlation modules in the stratified sample; descriptive only
๐ฆ
Modules Identified
30
Co-expression gene modules
๐งฌ
Genes Analyzed
2,000
Highly variable genes
Module Dendrogram
Hierarchical clustering of expression correlations in the stratified sample.
Module-Cell Type Association
Module eigengene activity across cell types.
Descriptive Marker RankingCell-type marker ranking in sampled cells; not donor-level differential inference
๐
Ranked Marker Rows
3,435
Cell-level descriptive thresholds; no independent donor replicates
๐ท๏ธ
Cell Types Compared
36
Cell populations analyzed
Marker Ranking Volcano Plot
Cell-level descriptive marker ranking; not donor-level differential inference.
Marker Gene Heatmap
Z-score normalized expression of top marker genes per cell type.
๐ Top Marker Genes
| names | scores | logfoldchanges | pvals | pvals_adj | pct_nz_group | pct_nz_reference | cell_type |
|---|---|---|---|---|---|---|---|
| COL12A1 | 24.4147 | 5.2466 | 0 | 0 | 0.9 | 0.1496 | Alveolar type 1 cells |
| CYP4B1 | 25.8119 | 5.173 | 0 | 0 | 0.96 | 0.2324 | Alveolar type 1 cells |
| LMO7 | 27.2215 | 4.8498 | 0 | 0 | 0.99 | 0.5801 | Alveolar type 1 cells |
| LAMA3 | 25.1362 | 4.7943 | 0 | 0 | 0.9433 | 0.2362 | Alveolar type 1 cells |
| WFDC2 | 22.4156 | 4.7388 | 0 | 0 | 1 | 0.2672 | Alveolar type 1 cells |
| SASH1 | 25.8902 | 4.6152 | 0 | 0 | 0.97 | 0.488 | Alveolar type 1 cells |
| RGCC | 24.0534 | 4.4684 | 0 | 0 | 0.9333 | 0.2982 | Alveolar type 1 cells |
| RBMS3 | 26.3692 | 4.4628 | 0 | 0 | 0.9967 | 0.5558 | Alveolar type 1 cells |
| LIMCH1 | 26.9259 | 4.3721 | 0 | 0 | 0.9733 | 0.6122 | Alveolar type 1 cells |
| ANXA3 | 22.0091 | 4.3387 | 0 | 0 | 0.8333 | 0.1808 | Alveolar type 1 cells |
| WFDC2 | 24.6457 | 5.2132 | 0 | 0 | 0.9967 | 0.2673 | Alveolar type 2 cells |
| SFTPD | 23.1202 | 4.9061 | 0 | 0 | 0.8567 | 0.1292 | Alveolar type 2 cells |
Showing top 12 rows
Metabolism AnalysisCurated metabolic gene-set expression scores; descriptive only
๐งช
Pathways Scored
12
Metabolic pathway gene sets tested
โ
Pathways Detected
12
Pathways with genes expressed in data
๐ท๏ธ
Cell Types Analyzed
36
Cell populations scored
Top Metabolic Pathways
Metabolic Pathway Heatmap
Curated metabolic gene-set expression scores across sampled cell types.
Top Metabolic Activities
Top pathway-cell type combinations ranked by activity score. Dot size: genes detected.
Disease AssociationCurated disease-gene set overlap; descriptive only
๐ฌ
Diseases Tested
15
Disease categories analyzed
โ
Significant Associations
39
Cell type-disease links (adj. p < 0.05)
Top Associated Diseases
Disease Association Heatmap
Curated disease-gene set overlap across sampled cell types; descriptive only.
Top Disease Associations
Dot size: overlap genes. Color: significance.
Drug Target AnalysisCurated drug-target expression matching; descriptive only
๐
Drugs Screened
18
Drug compounds evaluated
๐ฏ
Drugs with Targets
18
Drugs with target genes detected in data
๐ท๏ธ
Cell Types Analyzed
36
Cell populations scored
Top Associated Drugs
Drug Target Expression Heatmap
Curated drug-target expression scores across sampled cell types; descriptive only.
Top DrugโCell Type Associations
Dot size: % cells expressing targets. Color: number of targets detected.
๐ DrugโCell Type Scores
| drug | cell_type | category | indication | targets_detected | targets_total | mean_target_expr | pct_cells_expressing | deg_overlap | target_genes |
|---|---|---|---|---|---|---|---|---|---|
| Imatinib | Squamous cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.066 | 10.3333 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Basal cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.0585 | 10.8434 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Smooth muscle cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.159 | 26.3333 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Endothelial cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.1396 | 40.6667 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Keratinocytes | Kinase inhibitor | CML / GIST | 5 | 5 | 0.1756 | 56.3333 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Fibroblasts | Kinase inhibitor | CML / GIST | 5 | 5 | 0.1169 | 24.3333 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Cardiomyocytes | Kinase inhibitor | CML / GIST | 5 | 5 | 0.3897 | 85.3333 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Macrophages | Kinase inhibitor | CML / GIST | 5 | 5 | 0.2122 | 47.6667 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Ascending loop of Henle cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.4222 | 85.6667 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Descending limb of loop of Henle cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.1801 | 59.2593 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Principal cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.3082 | 82.0225 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Proximal tubule cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.1593 | 63 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
Showing top 12 rows ยท Download full table above
Exploratory Analysis FilesValidated module artifacts and individual downloads
Exploratory Result Files
Use the validated per-module links below. The general Atlas ZIP endpoint is not presented as containing this linked exploratory package.
Share Results
Use this permanent link to share these analysis results:
analysis.php?SP_ID=SP089
๐ Available Result Files
| Analysis | File | Type | Action |
|---|---|---|---|
| TF Associations | grn_tf_heatmap.png | Figure (PNG) | ๐ View |
| TF Associations | grn_network.png | Figure (PNG) | ๐ View |
| TF Associations | grn_tf_activity.csv | Data (CSV) | ๐ฅ Download |
| TF Associations | grn_tf_targets.csv | Data (CSV) | ๐ฅ Download |
| Co-expression | coexp_dendrogram.png | Figure (PNG) | ๐ View |
| Co-expression | coexp_module_heatmap.png | Figure (PNG) | ๐ View |
| Co-expression | coexp_modules.csv | Data (CSV) | ๐ฅ Download |
| Co-expression | coexp_eigengenes.csv | Data (CSV) | ๐ฅ Download |
| Marker Ranking | deg_volcano.png | Figure (PNG) | ๐ View |
| Marker Ranking | deg_marker_heatmap.png | Figure (PNG) | ๐ View |
| Marker Ranking | deg_top_markers.csv | Data (CSV) | ๐ฅ Download |
| Marker Ranking | deg_significant.csv | Data (CSV) | ๐ฅ Download |
| Marker Ranking | deg_all_results.csv | Data (CSV) | ๐ฅ Download |
| Metabolism | metabolism_heatmap.png | Figure (PNG) | ๐ View |
| Metabolism | metabolism_dotplot.png | Figure (PNG) | ๐ View |
| Metabolism | metabolism_scores.csv | Data (CSV) | ๐ฅ Download |
| Disease | disease_heatmap.png | Figure (PNG) | ๐ View |
| Disease | disease_dotplot.png | Figure (PNG) | ๐ View |
| Disease | disease_enrichment.csv | Data (CSV) | ๐ฅ Download |
| Drug Analysis | drug_heatmap.png | Figure (PNG) | ๐ View |
| Drug Analysis | drug_dotplot.png | Figure (PNG) | ๐ View |
| Drug Analysis | drug_scores.csv | Data (CSV) | ๐ฅ Download |
| Report | SP089_summary.json | Summary (JSON) | ๐ฅ Download |