TFs Analyzed
68
Transcription factors profiled
Exploratory Modules Available
Analysis Results SP894
Published legacy analysis modules for the selected page.
๐ Species Level
Validated exploratory / stratified sample.
Artifact and provenance checks passed for the linked advanced-module package.
These tabs use a deterministic tissue x cell-type stratified sample
(n=1,442,
seed=20260808) and are descriptive cell-level analyses,
not donor-level inference. Cell communication, species-wide trajectory, and age association remain not computed.
Cell Communication
Not computed
TF Associations
Exploratory
Co-expression
Exploratory
Trajectory
Not computed
Marker Ranking
Exploratory
GO / KEGG
Not computed
ToppGene
Not computed
Motif
Not computed
Metabolism
Exploratory
Disease
Exploratory
Drug Analysis
Exploratory
Full Report
Exploratory TF-Target AssociationsPearson associations in the stratified sample; not causal regulatory inference
๐๏ธ
๐
TF-Target Pairs
281
Thresholded Pearson associations
Top TF Association Counts
CEBPA
20 associations
ESR1
11 associations
GATA3
9 associations
HIF1A
28 associations
IRF1
19 associations
LEF1
31 associations
NFKB1
35 associations
NR3C1
10 associations
SOX2
21 associations
STAT3
10 associations
TF Activity Heatmap
Z-score normalized TF expression across cell populations.
Exploratory TF-Target Association Network
Pearson TF-target associations in the stratified sample; not a causal regulatory network.
Gene Co-expression NetworkExpression-correlation modules in the stratified sample; descriptive only
๐ฆ
Modules Identified
30
Co-expression gene modules
๐งฌ
Genes Analyzed
2,000
Highly variable genes
Module Dendrogram
Hierarchical clustering of expression correlations in the stratified sample.
Module-Cell Type Association
Module eigengene activity across cell types.
Descriptive Marker RankingCell-type marker ranking in sampled cells; not donor-level differential inference
๐
Ranked Marker Rows
689
Cell-level descriptive thresholds; no independent donor replicates
๐ท๏ธ
Cell Types Compared
8
Cell populations analyzed
Marker Ranking Volcano Plot
Cell-level descriptive marker ranking; not donor-level differential inference.
Marker Gene Heatmap
Z-score normalized expression of top marker genes per cell type.
๐ Top Marker Genes
| names | scores | logfoldchanges | pvals | pvals_adj | pct_nz_group | pct_nz_reference | cell_type |
|---|---|---|---|---|---|---|---|
| SLC6A11 | 7.8636 | 4.8431 | 0 | 0 | 0.3133 | 0.021 | Astrocytes |
| SLC1A2 | 12.365 | 4.5008 | 0 | 0 | 0.5133 | 0.0665 | Astrocytes |
| MLC1 | 11.019 | 4.3102 | 0 | 0 | 0.4567 | 0.0429 | Astrocytes |
| COL5A1 | 14.0769 | 4.2414 | 0 | 0 | 0.61 | 0.1025 | Astrocytes |
| FAM107A | 7.883 | 4.1841 | 0 | 0 | 0.3267 | 0.0324 | Astrocytes |
| HSPA12B | 7.3742 | 4.0041 | 0 | 0 | 0.3067 | 0.0298 | Astrocytes |
| ATP1B4 | 9.5593 | 3.9115 | 0 | 0 | 0.4067 | 0.0508 | Astrocytes |
| GPM6B | 10.7877 | 3.8952 | 0 | 0 | 0.4667 | 0.0709 | Astrocytes |
| MDK | 8.8557 | 3.6227 | 0 | 0 | 0.3867 | 0.0648 | Astrocytes |
| PDGFRB | 6.1421 | 3.5831 | 0 | 0 | 0.2633 | 0.035 | Astrocytes |
| ADGRL4 | 4.754 | 30.5075 | 0 | 0.0001 | 0.2887 | 0 | Endothelial cells |
| EGFL7 | 14.2446 | 11.3772 | 0 | 0 | 0.866 | 0.0045 | Endothelial cells |
Showing top 12 rows
Metabolism AnalysisCurated metabolic gene-set expression scores; descriptive only
๐งช
Pathways Scored
12
Metabolic pathway gene sets tested
โ
Pathways Detected
12
Pathways with genes expressed in data
๐ท๏ธ
Cell Types Analyzed
8
Cell populations scored
Top Metabolic Pathways
Metabolic Pathway Heatmap
Curated metabolic gene-set expression scores across sampled cell types.
Top Metabolic Activities
Top pathway-cell type combinations ranked by activity score. Dot size: genes detected.
Disease AssociationCurated disease-gene set overlap; descriptive only
๐ฌ
Diseases Tested
15
Disease categories analyzed
โ
Significant Associations
6
Cell type-disease links (adj. p < 0.05)
Top Associated Diseases
Disease Association Heatmap
Curated disease-gene set overlap across sampled cell types; descriptive only.
Top Disease Associations
Dot size: overlap genes. Color: significance.
Drug Target AnalysisCurated drug-target expression matching; descriptive only
๐
Drugs Screened
18
Drug compounds evaluated
๐ฏ
Drugs with Targets
14
Drugs with target genes detected in data
๐ท๏ธ
Cell Types Analyzed
8
Cell populations scored
Top Associated Drugs
Drug Target Expression Heatmap
Curated drug-target expression scores across sampled cell types; descriptive only.
Top DrugโCell Type Associations
Dot size: % cells expressing targets. Color: number of targets detected.
๐ DrugโCell Type Scores
| drug | cell_type | category | indication | targets_detected | targets_total | mean_target_expr | pct_cells_expressing | deg_overlap | target_genes |
|---|---|---|---|---|---|---|---|---|---|
| Imatinib | Oligodendrocytes | Kinase inhibitor | CML / GIST | 5 | 5 | 0.0586 | 11.6505 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Endothelial cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.0861 | 12.3711 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Radial glial cells | Kinase inhibitor | CML / GIST | 5 | 5 | 0.1389 | 21.5385 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Fibroblasts | Kinase inhibitor | CML / GIST | 5 | 5 | 0.6312 | 87.5 | 1 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Inhibitory neurons | Kinase inhibitor | CML / GIST | 5 | 5 | 0.0324 | 8 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Astrocytes | Kinase inhibitor | CML / GIST | 5 | 5 | 0.2643 | 38.3333 | 1 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Microglia | Kinase inhibitor | CML / GIST | 5 | 5 | 0.5019 | 76.4228 | 1 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Imatinib | Excitatory neurons | Kinase inhibitor | CML / GIST | 5 | 5 | 0.0341 | 7.3333 | 0 | ABL1,KIT,PDGFRA,PDGFRB,CSF1R |
| Trastuzumab | Oligodendrocytes | mAb | Breast cancer | 1 | 1 | 0.2204 | 9.7087 | 0 | ERBB2 |
| Trastuzumab | Endothelial cells | mAb | Breast cancer | 1 | 1 | 0.0359 | 1.0309 | 0 | ERBB2 |
| Trastuzumab | Radial glial cells | mAb | Breast cancer | 1 | 1 | 0.1225 | 4.1026 | 0 | ERBB2 |
| Trastuzumab | Fibroblasts | mAb | Breast cancer | 1 | 1 | 0 | 0 | 0 | ERBB2 |
Showing top 12 rows ยท Download full table above
Exploratory Analysis FilesValidated module artifacts and individual downloads
Exploratory Result Files
Use the validated per-module links below. The general Atlas ZIP endpoint is not presented as containing this linked exploratory package.
Share Results
Use this permanent link to share these analysis results:
analysis.php?SP_ID=SP894
๐ Available Result Files
| Analysis | File | Type | Action |
|---|---|---|---|
| TF Associations | grn_tf_heatmap.png | Figure (PNG) | ๐ View |
| TF Associations | grn_network.png | Figure (PNG) | ๐ View |
| TF Associations | grn_tf_activity.csv | Data (CSV) | ๐ฅ Download |
| TF Associations | grn_tf_targets.csv | Data (CSV) | ๐ฅ Download |
| Co-expression | coexp_dendrogram.png | Figure (PNG) | ๐ View |
| Co-expression | coexp_module_heatmap.png | Figure (PNG) | ๐ View |
| Co-expression | coexp_modules.csv | Data (CSV) | ๐ฅ Download |
| Co-expression | coexp_eigengenes.csv | Data (CSV) | ๐ฅ Download |
| Marker Ranking | deg_volcano.png | Figure (PNG) | ๐ View |
| Marker Ranking | deg_marker_heatmap.png | Figure (PNG) | ๐ View |
| Marker Ranking | deg_top_markers.csv | Data (CSV) | ๐ฅ Download |
| Marker Ranking | deg_significant.csv | Data (CSV) | ๐ฅ Download |
| Marker Ranking | deg_all_results.csv | Data (CSV) | ๐ฅ Download |
| Metabolism | metabolism_heatmap.png | Figure (PNG) | ๐ View |
| Metabolism | metabolism_dotplot.png | Figure (PNG) | ๐ View |
| Metabolism | metabolism_scores.csv | Data (CSV) | ๐ฅ Download |
| Disease | disease_heatmap.png | Figure (PNG) | ๐ View |
| Disease | disease_dotplot.png | Figure (PNG) | ๐ View |
| Disease | disease_enrichment.csv | Data (CSV) | ๐ฅ Download |
| Drug Analysis | drug_heatmap.png | Figure (PNG) | ๐ View |
| Drug Analysis | drug_dotplot.png | Figure (PNG) | ๐ View |
| Drug Analysis | drug_scores.csv | Data (CSV) | ๐ฅ Download |
| Report | SP894_summary.json | Summary (JSON) | ๐ฅ Download |