🔬
Tissue
Midbrain
Brain — Brainstem — Midbrain
Nervous system
Tissue Overview
The midbrain, or mesencephalon, is the uppermost and smallest region of the brainstem. It serves as a relay center for visual and auditory information, containing the superior and inferior colliculi. It plays a key role in motor control, reward, and arousal via structures like the substantia nigra (dopamine production) and the ventral tegmental area. It also contains nuclei for the oculomotor and trochlear cranial nerves.
Tissue UMAP Atlas & Gene Explorer
UMAP Atlas Not Available
The UMAP atlas data for Midbrain is not yet available.
Related Tissues
Brain — Neocortex — Frontal lobe
sys01tis01
Brain — Neocortex — Occipital lobe
sys01tis02
Brain — Neocortex — Parietal lobe
sys01tis03
Brain — Neocortex — Temporal lobe
sys01tis04
Brain — Hippocampus — Hippocampus
sys01tis05
Brain — Thalamus — Thalamus
sys01tis06
Brain — Hypothalamus — Hypothalamus
sys01tis07
Brain — Striatum — Striatum
sys01tis08
Brain — Cerebellum — Cerebellum
sys01tis09
Eye — Retina and pigment epithelium — Retina and pigment epithelium
sys01tis19
Spinal cord — Spinal cord — Spinal cord
sys01tis20
Sciatic nerve — Sciatic nerve — Sciatic nerve
sys01tis21
Brain — Neocortex — Neocortex
sys01tis22
Brain — Brainstem — Midbrain
sys01tis11
Brain — Brainstem — Pons
sys01tis12
Brain — Olfactory bulb — Olfactory bulb
sys01tis13
Cell Type
Expression
Coords