GSM5528499

Dataset: gse182409 • Sample: T003 • Status: Pregnancy-stage cohort
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Quality Control Metrics

59,046,780 Total counts Group median: 70,855,220 • 21.6%ile (↓ Low)
27,218 Detected genes Group median: 31,576 • 7.9%ile (↓ Low)
0 Mitochondrial fraction (%) Group median: 0 • 19.5%ile (↓ Low)

GSE182409 values are from the Chinese-only whole-blood raw count matrix and TMM-normalized logCPM matrix.

Single Gene Lookup

- Expression: - Cohort median: - Cohort %ile: - -

Top 20 Expressed Genes

#GeneIDTypeExpression (logCPM)Count
1 MALAT1 ENSG00000251562 lncRNA 13.8 802,193
2 7SK ENSG00000202198 misc_RNA 13.8 781,520
3 ENSG00000265150 ENSG00000265150 13.8 778,242
4 ENSG00000258486 ENSG00000258486 13.7 713,854
5 B2M ENSG00000166710 protein_coding 13.4 582,633
6 S100A9 ENSG00000163220 protein_coding 12.9 432,498
7 NAMPT ENSG00000105835 protein_coding 12.9 428,242
8 AL355075.4 ENSG00000259001 lncRNA 12.5 314,046
9 SORL1 ENSG00000137642 protein_coding 12.4 307,103
10 SOD2 ENSG00000112096 protein_coding 12.4 290,158

Immune Marker Gene Expression (15 markers)

Inflammation / myeloid (4)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
1 S100A8 protein_coding 11.8
bar=donor   line=cohort median 		11.8 11.8 46.2%
2 S100A9 protein_coding 12.9
bar=donor   line=cohort median 		13.1 13.1 40.8%
3 IL1B protein_coding 7.1
bar=donor   line=cohort median 		6.9 6.9 69.5%
4 CXCL8 protein_coding 8.3
bar=donor   line=cohort median 		7.6 7.6 77.7%

Neutrophil (2)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
5 MPO protein_coding 2.3
bar=donor   line=cohort median 		4.0 4.0 7.2%
6 FCGR3B protein_coding 11.8
bar=donor   line=cohort median 		11.3 11.3 81.2%

Myeloid (1)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
7 LYZ protein_coding 9.6
bar=donor   line=cohort median 		10.9 10.9 1.0%

T cells (2)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
8 CD3D protein_coding 5.0
bar=donor   line=cohort median 		5.3 5.3 16.8%
9 CD3E protein_coding 2.1
bar=donor   line=cohort median 		2.6 2.6 25.7%

B cells (1)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
10 MS4A1 protein_coding 5.7
bar=donor   line=cohort median 		6.3 6.3 13.4%

NK / cytotoxic (2)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
11 NKG7 protein_coding 2.6
bar=donor   line=cohort median 		3.4 3.4 14.7%
12 GNLY protein_coding 3.5
bar=donor   line=cohort median 		4.9 4.9 2.4%

Hemoglobin / erythroid (3)

#GeneTypeExpressionvs CohortGroup MedianCohort Median%ile
13 HBB protein_coding 10.6
bar=donor   line=cohort median 		6.6 6.6 90.8%
14 HBA1 protein_coding 5.2
bar=donor   line=cohort median 		2.6 2.6 77.7%
15 HBA2 protein_coding 8.7
bar=donor   line=cohort median 		5.6 5.6 81.8%
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