P-S001
De-identified Human Immune Atlas donor/sample detail for COVID19_PBMC. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
P-S001
Sample ID
S-S001-1, S-S001-2, S-S001-3
Dataset
COVID19_PBMC
Cohort
GSE158055 COVID-19 atlas; Guangzhou
Age / Age Group
72 years
Sex
Male
Health Status
COVID-19 severe/critical; sample time: progression; SARS-CoV-2 positive; outcome: discharged
Tissue / Cell Source
fresh Sputum, fresh PBMC, fresh PFMC
Modality
scRNA-seq
Cell Count
10,134
Analysis Status
Published scRNA-seq metadata + local UMAP export
UMAP Status
Ready
Metadata / Source Notes
Official GEO patient ID: P-S001; library samples: S-S001-1, S-S001-2, S-S001-3; GSM accessions: GSM4787425, GSM4787414, GSM4787415; batches: Batch14; cities: Guangzhou; severity: severe/critical; sample time: progression; sampling days after symptom onset: 29, 20; SARS-CoV-2: positive; BCR/TCR sequencing: No/No; per-sample cell counts: S-S001-1:248; S-S001-2:3595; S-S001-3:6291; top major cell types: CD4:5677; CD8:2531; Mono:588; Macro:557; B:342; comorbidities: type II respiratory failure, septic shock,hypertension, sleep apnea syndrome,chronic hepatitis, type 2 diabetes,chronic obstructive pulmonary disease,acute kidney injury,septic shock,hypertension,multiple organ dysfunction syndrome, blood coagulation disorders,myocardial damage; medications: methylprednisolone, methylprednisolone, Thymosin Alpha1, Ribavirin, methylprednisolone, Ribavirin; UMAP export: X_umap from BLOOD0003.meta.h5ad, 3694 cells in local filtered embedding
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
library count
3
library sample ids
S-S001-1, S-S001-2, S-S001-3
source reference
GSE158055 sample metadata/cell annotation; related source(s): unpublished, PMID: 32671793
data accession
GSE158055; GSM4787425, GSM4787414, GSM4787415
article url