P-S004
De-identified Human Immune Atlas donor/sample detail for COVID19_PBMC. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
P-S004
Sample ID
S-S004-1, S-S004-2, S-S004-3
Dataset
COVID19_PBMC
Cohort
GSE158055 COVID-19 atlas; Guangzhou
Age / Age Group
65 years
Sex
Female
Health Status
COVID-19 severe/critical; sample time: progression; SARS-CoV-2 positive; outcome: discharged
Tissue / Cell Source
fresh Sputum
Modality
scRNA-seq
Cell Count
790
Analysis Status
Published scRNA-seq metadata + local UMAP export
UMAP Status
Ready
Metadata / Source Notes
Official GEO patient ID: P-S004; library samples: S-S004-1, S-S004-2, S-S004-3; GSM accessions: GSM4787421, GSM4787422, GSM4787423; batches: Batch14; cities: Guangzhou; severity: severe/critical; sample time: progression; sampling days after symptom onset: 12; SARS-CoV-2: positive; BCR/TCR sequencing: No/No; per-sample cell counts: S-S004-1:489; S-S004-2:71; S-S004-3:230; top major cell types: Mono:489; Neu:137; Epi:112; Macro:29; B:7; comorbidities: type i respiratory failure,sepsis,arhythmia,hypoproteinemia, type 2 diabetes,hypertension,sequel of cerebral infarction,vascular dementia; medications: Prednisone, methylprednisolone, gama-globulin, Ribavirin, Ribavirin; UMAP export: X_umap from BLOOD0003.meta.h5ad, 771 cells in local filtered embedding
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
library count
3
library sample ids
S-S004-1, S-S004-2, S-S004-3
source reference
GSE158055 sample metadata/cell annotation; related source(s): unpublished
data accession
GSE158055; GSM4787421, GSM4787422, GSM4787423
article url