P-S005
De-identified Human Immune Atlas donor/sample detail for COVID19_PBMC. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
P-S005
Sample ID
S-S005-1, S-S005-2
Dataset
COVID19_PBMC
Cohort
GSE158055 COVID-19 atlas; Guangzhou
Age / Age Group
61 years
Sex
Male
Health Status
COVID-19 severe/critical; sample time: progression; SARS-CoV-2 positive; outcome: discharged
Tissue / Cell Source
fresh Sputum
Modality
scRNA-seq
Cell Count
1,356
Analysis Status
Published scRNA-seq metadata + local UMAP export
UMAP Status
Ready
Metadata / Source Notes
Official GEO patient ID: P-S005; library samples: S-S005-1, S-S005-2; GSM accessions: GSM4787424, GSM4787429; batches: Batch14; cities: Guangzhou; severity: severe/critical; sample time: progression; sampling days after symptom onset: 34, 40; SARS-CoV-2: positive; BCR/TCR sequencing: No/No; per-sample cell counts: S-S005-1:274; S-S005-2:1082; top major cell types: Mono:497; Neu:417; Macro:276; Epi:106; DC:41; comorbidities: type II respiratory failure, septic shock,hypertension, sleep apnea syndrome,chronic hepatitis; medications: methylprednisolone, methylprednisolone, Thymosin Alpha1, Ribavirin; UMAP export: X_umap from BLOOD0003.meta.h5ad, 1183 cells in local filtered embedding
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
library count
2
library sample ids
S-S005-1, S-S005-2
source reference
GSE158055 sample metadata/cell annotation; related source(s): unpublished
data accession
GSE158055; GSM4787424, GSM4787429
article url