P-S054
De-identified Human Immune Atlas donor/sample detail for COVID19_PBMC. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
P-S054
Sample ID
S-S054
Dataset
COVID19_PBMC
Cohort
GSE158055 COVID-19 atlas; Beijing
Age / Age Group
40 years
Sex
Male
Health Status
COVID-19 severe/critical; sample time: progression; SARS-CoV-2 positive; outcome: discharged
Tissue / Cell Source
fresh PBMC
Modality
scRNA-seq
Cell Count
5,763
Analysis Status
Published scRNA-seq metadata + local UMAP export
UMAP Status
Ready
Metadata / Source Notes
Official GEO patient ID: P-S054; library samples: S-S054; GSM accessions: GSM4787492; batches: Batch02; cities: Beijing; severity: severe/critical; sample time: progression; sampling days after symptom onset: 4; SARS-CoV-2: positive; BCR/TCR sequencing: Yes/Yes; per-sample cell counts: S-S054:5763; top major cell types: Mono:2056; CD8:1105; NK:1036; CD4:986; B:450; comorbidities: diabetes; medications: Interferon alpha 2 b, Lopinavir/ ritonavir, steroids, Human immunoglobulin, antibiotics, antifungal, MSC(mesenchymal stem cell); UMAP export: X_umap from BLOOD0003.meta.h5ad, 4589 cells in local filtered embedding
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
library count
1
library sample ids
S-S054
source reference
GSE158055 sample metadata/cell annotation; related source(s): PMID: 32788748
data accession
GSE158055; GSM4787492
article url