P-S086
De-identified Human Immune Atlas donor/sample detail for COVID19_PBMC. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
P-S086
Sample ID
S-S086-1, S-S086-2
Dataset
COVID19_PBMC
Cohort
GSE158055 COVID-19 atlas; Shenzhen
Age / Age Group
66 years
Sex
Male
Health Status
COVID-19 severe/critical; sample time: progression; SARS-CoV-2 positive; outcome: deceased
Tissue / Cell Source
fresh BALF, fresh PBMC
Modality
scRNA-seq
Cell Count
28,625
Analysis Status
Published scRNA-seq metadata + local UMAP export
UMAP Status
Ready
Metadata / Source Notes
Official GEO patient ID: P-S086; library samples: S-S086-1, S-S086-2; GSM accessions: GSM4787538, GSM4787539; batches: Batch07; cities: Shenzhen; severity: severe/critical; sample time: progression; sampling days after symptom onset: 18, 28; SARS-CoV-2: positive; BCR/TCR sequencing: No/Yes; per-sample cell counts: S-S086-1:15767; S-S086-2:12858; top major cell types: Mono:7933; Macro:7799; CD4:4276; CD8:4186; NK:2389; comorbidities: Hypertension, Hyperpression; medications: Interferon atomization, Ribavirin, Methyl-prednisolone; UMAP export: X_umap from BLOOD0003.meta.h5ad, 23177 cells in local filtered embedding
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
library count
2
library sample ids
S-S086-1, S-S086-2
source reference
GSE158055 sample metadata/cell annotation; related source(s): PMID: 32398875, unpublished
data accession
GSE158055; GSM4787538, GSM4787539
article url