A048
De-identified Human Immune Atlas donor/sample detail for Neutrophil_LiverCancer_Nature_2022. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
A048
Sample ID
A048_ICC, A048_ICC_IM1, A048_ICC_IM2, A048_ICC_IM3, A048_ICC_IM4
Dataset
Neutrophil_LiverCancer_Nature_2022
Cohort
Human liver cancer cohort, 124 patients
Age / Age Group
44 years
Sex
Female
Health Status
Intrahepatic cholangiocarcinoma (ICC); TNM IVB; BCLC C
Tissue / Cell Source
tumor tissue; multi-region tumor tissue
Modality
scRNA-seq
Cell Count
30,450
Analysis Status
Published scRNA-seq
UMAP Status
Ready
Metadata / Source Notes
Source: Nature Supplementary Table 1a/1b; patient samples: A048_ICC, A048_ICC_IM1, A048_ICC_IM2, A048_ICC_IM3, A048_ICC_IM4; library samples: A048_ICC, A048_ICC_IM1, A048_ICC_IM2, A048_ICC_IM3, A048_ICC_IM4; no. PB samples: 0; no. adjacent liver samples: 0; no. tumor samples: 5; differentiation: Low; venous invasion: 1; cirrhosis: 0
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Intrahepatic cholangiocarcinoma
cancer type short
ICC
tnm stage
IVB
bclc stage
C
virus
NBNC
tumor size cm
0.2,12
differentiation
Low
venous invasion
1
cirrhosis
0
afp ug l
3.78
ca199 u ml
134.2
cea ug l
0.15
library count
5
library sample ids
A048_ICC, A048_ICC_IM1, A048_ICC_IM2, A048_ICC_IM3, A048_ICC_IM4
total reads
2306619694
source reference
Xue et al., Nature 612, 141-147 (2022), Supplementary Table 1
data accession
PRJCA007744
article url