SCAR_Patient_000498
De-identified Human Immune Atlas donor/sample detail for SCAR244. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
SCAR_Patient_000498
Sample ID
SCAR_Sample_000671
Dataset
SCAR244
Cohort
SCAR2023 China cancer patient subset excluding the Nature 2022 liver-neutrophil article
Age / Age Group
64
Sex
Male
Health Status
Pancreatic Ductal Adenocarcinoma
Tissue / Cell Source
Tail
Modality
scRNA-seq (SCAR2023 curated cancer cohorts)
Cell Count
Not provided in SCAR patient table
Analysis Status
RDS online; donor UMAP generated
UMAP Status
Ready
Metadata / Source Notes
source=SCAR2023; scar_patient_id=SCAR_Patient_000498; original_patient_id=PUMCH-T6; scar_atlas_ids=SCAR_Atlas_0893; hospital=Peking Union Medical College Hospital (PUMCH); country=China; tumor_or_normal=Primary tumor; original_sample_ids=; excluded_article=Liver tumour immune microenvironment subtypes and neutrophil heterogeneity; subset_rule=China patients excluding SCAR_Atlas_0966-SCAR_Atlas_0976; scar244_umap_rule=orig.ident_exact:T6; scar244_umap_cells=1819; Missing donor age/sex marked as not reported in public SCAR metadata after manifest audit.
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Pancreatic Ductal Adenocarcinoma
cancer type short
PDAC
tnm stage
IIA
bclc stage
Not provided
virus
Not provided
tumor size cm
Not provided
differentiation
Not provided
venous invasion
Not provided
cirrhosis
Not provided
afp ug l
Not provided
ca199 u ml
155.1
cea ug l
Not provided
library count
1
library sample ids
SCAR_Sample_000671
total reads
Not provided
source reference
SCAR2023 China patient table; unique patients not from Liver tumour immune microenvironment subtypes and neutrophil heterogeneity
data accession
SCAR_Atlas_0893
article url
matrix status
RDS online
matrix file name
Cancer/SCAR_Atlas_0893.rds
matrix file size bytes
4134938742
matrix file size mb
3943.38
matrix download url
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/scar244_umap/coords/SCAR_Patient_000498.umap.tsv.gz
umap summary url
umap pipeline
Seurat v5 RDS; precomputed umap reduction; donor cells matched by sample/orig.ident/cell-name token.
matrix integrity status
RDS readable by Seurat; online mirror size verified