SCAR_Patient_001413
De-identified Human Immune Atlas donor/sample detail for SCAR244. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
SCAR_Patient_001413
Sample ID
SCAR_Sample_001992
Dataset
SCAR244
Cohort
SCAR2023 China cancer patient subset excluding the Nature 2022 liver-neutrophil article
Age / Age Group
80
Sex
Female
Health Status
Ganglioneuroma
Tissue / Cell Source
Brain
Modality
scRNA-seq (SCAR2023 curated cancer cohorts)
Cell Count
Not provided in SCAR patient table
Analysis Status
RDS available; donor-cell mapping unresolved; UMAP not generated
UMAP Status
Mapping unresolved
Metadata / Source Notes
source=SCAR2023; scar_patient_id=SCAR_Patient_001413; original_patient_id=GN1; scar_atlas_ids=SCAR_Atlas_0457; hospital=Xinhua Hospital affiliated to Shanghai Jiao Tong University School of Medicine; country=China; tumor_or_normal=Tumor; original_sample_ids=GN1; excluded_article=Liver tumour immune microenvironment subtypes and neutrophil heterogeneity; subset_rule=China patients excluding SCAR_Atlas_0966-SCAR_Atlas_0976; Missing donor age/sex marked as not reported in public SCAR metadata after manifest audit.
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Ganglioneuroma
cancer type short
Not provided
tnm stage
/
bclc stage
Not provided
virus
Not provided
tumor size cm
Not provided
differentiation
Not provided
venous invasion
Not provided
cirrhosis
Not provided
afp ug l
Not provided
ca199 u ml
Not provided
cea ug l
Not provided
library count
1
library sample ids
SCAR_Sample_001992
total reads
Not provided
source reference
SCAR2023 China patient table; unique patients not from Liver tumour immune microenvironment subtypes and neutrophil heterogeneity
data accession
SCAR_Atlas_0457
article url
matrix status
RDS online
matrix file name
Cancer/SCAR_Atlas_0457.rds
matrix file size bytes
129101336
matrix file size mb
123.12
matrix download url
umap summary url
umap pipeline
Seurat RDS inspected; donor UMAP not generated.
matrix integrity status
RDS readable by Seurat; online mirror size verified