SCAR_Patient_001422
De-identified Human Immune Atlas donor/sample detail for SCAR244. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
SCAR_Patient_001422
Sample ID
SCAR_Sample_002001
Dataset
SCAR244
Cohort
SCAR2023 China cancer patient subset excluding the Nature 2022 liver-neutrophil article
Age / Age Group
89
Sex
Male
Health Status
Colon cancer
Tissue / Cell Source
Colon
Modality
scRNA-seq (SCAR2023 curated cancer cohorts)
Cell Count
Not provided in SCAR patient table
Analysis Status
RDS online; donor UMAP generated
UMAP Status
Ready
Metadata / Source Notes
source=SCAR2023; scar_patient_id=SCAR_Patient_001422; original_patient_id=P0613; scar_atlas_ids=SCAR_Atlas_0489; hospital=Peking University Peoples Hospital; country=China; tumor_or_normal=Primary tumor; original_sample_ids=P0613; excluded_article=Liver tumour immune microenvironment subtypes and neutrophil heterogeneity; subset_rule=China patients excluding SCAR_Atlas_0966-SCAR_Atlas_0976; scar244_umap_rule=cell_name_token:P0613; scar244_umap_cells=1383; Missing donor age/sex marked as not reported in public SCAR metadata after manifest audit.
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Colon cancer
cancer type short
Not provided
tnm stage
B
bclc stage
Not provided
virus
Not provided
tumor size cm
3.5x2cm
differentiation
Not provided
venous invasion
Not provided
cirrhosis
Not provided
afp ug l
Not provided
ca199 u ml
Not provided
cea ug l
Not provided
library count
1
library sample ids
SCAR_Sample_002001
total reads
Not provided
source reference
SCAR2023 China patient table; unique patients not from Liver tumour immune microenvironment subtypes and neutrophil heterogeneity
data accession
SCAR_Atlas_0489
article url
matrix status
RDS online
matrix file name
Cancer/SCAR_Atlas_0489.rds
matrix file size bytes
5465602142
matrix file size mb
5212.40
matrix download url
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/scar244_umap/coords/SCAR_Patient_001422.umap.tsv.gz
umap summary url
umap pipeline
Seurat v5 RDS; precomputed umap reduction; donor cells matched by sample/orig.ident/cell-name token.
matrix integrity status
RDS readable by Seurat; online mirror size verified