SCAR_Patient_001643
De-identified Human Immune Atlas donor/sample detail for SCAR244. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
SCAR_Patient_001643
Sample ID
SCAR_Sample_002069
Dataset
SCAR244
Cohort
SCAR2023 China cancer patient subset excluding the Nature 2022 liver-neutrophil article
Age / Age Group
65
Sex
Male
Health Status
Hepatocellular carcinoma
Tissue / Cell Source
Unknown
Modality
scRNA-seq (SCAR2023 curated cancer cohorts)
Cell Count
Not provided in SCAR patient table
Analysis Status
RDS online; donor UMAP generated
UMAP Status
Ready
Metadata / Source Notes
source=SCAR2023; scar_patient_id=SCAR_Patient_001643; original_patient_id=HCC02; scar_atlas_ids=SCAR_Atlas_0640; hospital=Chinese people's liberation army general hospital; country=China; tumor_or_normal=Primary tumor; original_sample_ids=; excluded_article=Liver tumour immune microenvironment subtypes and neutrophil heterogeneity; subset_rule=China patients excluding SCAR_Atlas_0966-SCAR_Atlas_0976; scar244_umap_rule=sample_prefix:HCC02; scar244_umap_cells=3789; Missing donor age/sex marked as not reported in public SCAR metadata after manifest audit.
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Hepatocellular carcinoma
cancer type short
Not provided
tnm stage
I
bclc stage
Not provided
virus
HBV
tumor size cm
Not provided
differentiation
Not provided
venous invasion
Not provided
cirrhosis
Not provided
afp ug l
Not provided
ca199 u ml
Not provided
cea ug l
Not provided
library count
1
library sample ids
SCAR_Sample_002069
total reads
Not provided
source reference
SCAR2023 China patient table; unique patients not from Liver tumour immune microenvironment subtypes and neutrophil heterogeneity
data accession
SCAR_Atlas_0640
article url
matrix status
RDS online
matrix file name
Cancer/SCAR_Atlas_0640.rds
matrix file size bytes
13017872372
matrix file size mb
12414.81
matrix download url
umap coordinates url
http://8.142.154.29/LACA/data/human_immune_atlas/scar244_umap/coords/SCAR_Patient_001643.umap.tsv.gz
umap summary url
umap pipeline
Seurat v5 RDS; precomputed umap reduction; donor cells matched by sample/orig.ident/cell-name token.
matrix integrity status
RDS readable by Seurat; online mirror size verified