SCAR_Patient_001652
De-identified Human Immune Atlas donor/sample detail for SCAR244. The record preserves available public metadata while avoiding direct identifiers.
Primary Metadata
Core de-identified metadata fields migrated from the ImmuneAging donor manifest.
Donor ID
SCAR_Patient_001652
Sample ID
SCAR_Sample_002063
Dataset
SCAR244
Cohort
SCAR2023 China cancer patient subset excluding the Nature 2022 liver-neutrophil article
Age / Age Group
Not reported in public SCAR metadata
Sex
Female
Health Status
Intrahepatic cholangiocarcinoma
Tissue / Cell Source
Bile Duct
Modality
scRNA-seq (SCAR2023 curated cancer cohorts)
Cell Count
Not provided in SCAR patient table
Analysis Status
RDS available; donor-cell mapping unresolved; UMAP not generated
UMAP Status
Mapping unresolved
Metadata / Source Notes
source=SCAR2023; scar_patient_id=SCAR_Patient_001652; original_patient_id=ICC18; scar_atlas_ids=SCAR_Atlas_0632; hospital=Chinese people's liberation army general hospital; country=China; tumor_or_normal=Primary tumor; original_sample_ids=18T; excluded_article=Liver tumour immune microenvironment subtypes and neutrophil heterogeneity; subset_rule=China patients excluding SCAR_Atlas_0966-SCAR_Atlas_0976; Missing donor age/sex marked as not reported in public SCAR metadata after manifest audit.
Additional Clinical / Source Fields
Supplementary source metadata retained from the migrated manifest where available.
cancer type
Intrahepatic cholangiocarcinoma
cancer type short
Not provided
tnm stage
Not provided
bclc stage
Not provided
virus
HBV(+)
tumor size cm
Not provided
differentiation
Not provided
venous invasion
Not provided
cirrhosis
Not provided
afp ug l
Not provided
ca199 u ml
Not provided
cea ug l
Not provided
library count
1
library sample ids
SCAR_Sample_002063
total reads
Not provided
source reference
SCAR2023 China patient table; unique patients not from Liver tumour immune microenvironment subtypes and neutrophil heterogeneity
data accession
SCAR_Atlas_0632
article url
matrix status
RDS online
matrix file name
Cancer/SCAR_Atlas_0632.rds
matrix file size bytes
651175148
matrix file size mb
621.01
matrix download url
umap summary url
umap pipeline
Seurat RDS inspected; donor UMAP not generated.
matrix integrity status
RDS readable by Seurat; online mirror size verified