Longevity & Aging
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Kidney
Tissue-level analysis ยท GSE227359
Kidney RNA-seq profile
Kidney RNA-seq samples
A reproducible descriptive view of the deposited GSE227359 raw-count matrix:
matrix-total CPM, sample composition, matrix-column sums, detected genes, high-expression
ranking, and PCA. No differential-expression or causal claim is made.
Deposited matrix
GSE227359
16,816 matrix rows
12 selected samples
1 represented tissue
12,364 median genes at CPM โฅ 1
18.0M median matrix column sum
Interpretation boundary.
These are descriptive summaries of deposited raw counts normalized by the sum of all published
matrix rows in each sample. Matrix-total CPM is not a substitute for a full differential-expression
workflow, and the paper-wide 371-sample integration is not reconstructed here.
Matrix overview
What is represented in this exact slice
Counts below refer only to the selected GSE227359 columns
.
01
Species representation
Number of biological sample columns per group
Long Tailed Macaque
n = 5
02
Matrix column sums
Per-sample total across all published gene rows
Range: 14.5Mโ21.0M counts.
This is a matrix-column sum, not an independently reported sequencing depth.
Expression structure
Sample separation and dominant transcripts
Visual summaries retain replicate-level information and expose sample counts.
03
Principal component view
Exploratory structure in log2(CPM + 1)
PC1 ยท 48.1%
PC2 ยท 41.9%
PCA of centered log2(matrix-total CPM + 1), using up to 500 highest-variance genes with nonzero matrix-total CPM in at least 20% of selected samples.
04
Top mean-expression genes
Ranked by mean matrix-total CPM
ENSMUSG00000064370
26,100.6 CPM
12/12 samples at CPM โฅ 1
ENSMUSG00000064363
21,906.7 CPM
12/12 samples at CPM โฅ 1
ENSMUSG00000064351
18,163.5 CPM
9/12 samples at CPM โฅ 1
ENSMUSG00000064367
16,165.2 CPM
12/12 samples at CPM โฅ 1
Umod
15,928.5 CPM
12/12 samples at CPM โฅ 1
Eef1a1
15,216.0 CPM
12/12 samples at CPM โฅ 1
ENSMUSG00000064341
14,379.9 CPM
12/12 samples at CPM โฅ 1
ENSMUSG00000064345
12,383.8 CPM
12/12 samples at CPM โฅ 1
Aldob
6,655.5 CPM
12/12 samples at CPM โฅ 1
Atp1a1
6,197.7 CPM
12/12 samples at CPM โฅ 1
ENSMUSG00000064354
5,196.2 CPM
3/12 samples at CPM โฅ 1
ENSMUSG00000064358
3,847.4 CPM
3/12 samples at CPM โฅ 1
Reproducible sample audit
Every selected matrix column
The table is the text equivalent for the sample-level visualizations above.
Sample
Species group
Tissue
Replicate
Matrix column sum
Genes at CPM โฅ 1
LongTailedMacaque_1_Kidney
Long Tailed Macaque
Kidney
1
18,626,196
12,227
LongTailedMacaque_2_Kidney
Long Tailed Macaque
Kidney
2
17,431,058
12,266
LongTailedMacaque_3_Kidney
Long Tailed Macaque
Kidney
3
17,920,612
12,297
LongTailedMacaque_5_Kidney
Long Tailed Macaque
Kidney
5
21,027,879
12,382
LongTailedMacaque_6_Kidney
Long Tailed Macaque
Kidney
6
19,323,874
12,388
Baboon_1_Kidney
Baboon
Kidney
1
18,679,932
12,242
Baboon_2_Kidney
Baboon
Kidney
2
15,802,387
12,546
Baboon_3_Kidney
Baboon
Kidney
3
16,368,519
12,465
Baboon_4_Kidney
Baboon
Kidney
4
18,120,741
12,595
Baboon_5_Kidney
Baboon
Kidney
5
18,603,553
12,346
Baboon_6_Kidney
Baboon
Kidney
6
16,244,015
12,419
Bear_1_Kidney
Bear
Kidney
1
14,538,726
10,659
Method and provenance
How this page was calculated
Normalization
Matrix-total CPM
raw count / sum of all published matrix gene rows in the sample ร 1,000,000. A gene is called detected at CPM โฅ 1.
Ranking
Descriptive mean expression
Top genes are ranked by mean CPM across the exact selected sample columns; no p-values are calculated.
Source integrity
GSE227359
SHA-256: 02ccd190468eb1709362fb90021f9cf97e48e464f7732a2d895a72c3a29d0d32