Tissue-level analysis · GSE227359

Liver RNA-seq profile

Liver RNA-seq samples

A reproducible descriptive view of the deposited GSE227359 raw-count matrix: matrix-total CPM, sample composition, matrix-column sums, detected genes, high-expression ranking, and PCA. No differential-expression or causal claim is made.

Open dataset gene explorer → Open representative Liver LACA view → Open GEO ↗

Deposited matrix GSE227359 16,816 matrix rows

GSE227359 GSE227358

21selected samples

1represented tissue

10,778median genes at CPM ≥ 1

23.0Mmedian matrix column sum

Matrix overview

What is represented in this exact slice

Counts below refer only to the selected GSE227359 columns .

Species representation

Number of biological sample columns per group

Beaver n = 2

Long Tailed Macaque n = 6

Tube Nosed Bat n = 1

Baboon n = 6

White Footed Mouse n = 1

Sugar Glider n = 2

Chipmunk n = 2

Bear n = 1

Matrix column sums

Per-sample total across all published gene rows

21.6M Beaver_1_Liver

23.0M Beaver_2_Liver

26.8M LongTailedMacaque_1_Liver

24.3M LongTailedMacaque_2_Liver

25.9M LongTailedMacaque_3_Liver

22.7M LongTailedMacaque_4_Liver

21.9M LongTailedMacaque_5_Liver

23.0M LongTailedMacaque_6_Liver

8.6M TubeNosedBat_1_Liver

25.5M Baboon_1_Liver

24.1M Baboon_2_Liver

25.7M Baboon_3_Liver

26.4M Baboon_4_Liver

24.8M Baboon_5_Liver

25.2M Baboon_6_Liver

12.8M WhiteFootedMouse_1_Liver

12.4M SugarGlider_1_Liver

12.0M SugarGlider_2_Liver

14.6M Chipmunk_1_Liver

22.3M Chipmunk_2_Liver

15.0M Bear_1_Liver

Range: 8.6M–26.8M counts. This is a matrix-column sum, not an independently reported sequencing depth.

Expression structure

Sample separation and dominant transcripts

Visual summaries retain replicate-level information and expose sample counts.

Principal component view

Exploratory structure in log2(CPM + 1)

PC1 · 41.0% PC2 · 15.3%

Beaver Long Tailed Macaque Tube Nosed Bat Baboon White Footed Mouse Sugar Glider Chipmunk Bear

PCA of centered log2(matrix-total CPM + 1), using up to 500 highest-variance genes with nonzero matrix-total CPM in at least 20% of selected samples.

Top mean-expression genes

Ranked by mean matrix-total CPM

Alb 152,899.7 CPM

21/21 samples at CPM ≥ 1

C3 18,381.4 CPM

21/21 samples at CPM ≥ 1

Fgb 14,256.1 CPM

21/21 samples at CPM ≥ 1

Hp 13,790.1 CPM

20/21 samples at CPM ≥ 1

ENSMUSG00000064351 12,066.1 CPM

15/21 samples at CPM ≥ 1

Fgg 11,414.3 CPM

21/21 samples at CPM ≥ 1

Fga 10,306.3 CPM

21/21 samples at CPM ≥ 1

Inhca 9,771.1 CPM

21/21 samples at CPM ≥ 1

ENSMUSG00000064363 8,775.5 CPM

19/21 samples at CPM ≥ 1

Eef1a1 8,328.2 CPM

21/21 samples at CPM ≥ 1

Ambp 8,063.6 CPM

21/21 samples at CPM ≥ 1

Apoa1 8,009.9 CPM

21/21 samples at CPM ≥ 1

Reproducible sample audit

Every selected matrix column

The table is the text equivalent for the sample-level visualizations above.

Sample	Species group	Tissue	Replicate	Matrix column sum	Genes at CPM ≥ 1
Beaver_1_Liver	Beaver	Liver	1	21,593,334	10,778
Beaver_2_Liver	Beaver	Liver	2	22,969,388	10,680
LongTailedMacaque_1_Liver	Long Tailed Macaque	Liver	1	26,801,829	10,728
LongTailedMacaque_2_Liver	Long Tailed Macaque	Liver	2	24,345,191	10,752
LongTailedMacaque_3_Liver	Long Tailed Macaque	Liver	3	25,900,802	10,888
LongTailedMacaque_4_Liver	Long Tailed Macaque	Liver	4	22,719,947	10,937
LongTailedMacaque_5_Liver	Long Tailed Macaque	Liver	5	21,915,567	11,221
LongTailedMacaque_6_Liver	Long Tailed Macaque	Liver	6	22,995,928	10,900
TubeNosedBat_1_Liver	Tube Nosed Bat	Liver	1	8,640,749	11,293
Baboon_1_Liver	Baboon	Liver	1	25,494,553	10,952
Baboon_2_Liver	Baboon	Liver	2	24,084,789	10,778
Baboon_3_Liver	Baboon	Liver	3	25,711,045	10,795
Baboon_4_Liver	Baboon	Liver	4	26,381,626	10,929
Baboon_5_Liver	Baboon	Liver	5	24,842,433	10,989
Baboon_6_Liver	Baboon	Liver	6	25,196,839	11,039
WhiteFootedMouse_1_Liver	White Footed Mouse	Liver	1	12,824,599	8,480
SugarGlider_1_Liver	Sugar Glider	Liver	1	12,412,864	10,191
SugarGlider_2_Liver	Sugar Glider	Liver	2	12,006,700	9,983
Chipmunk_1_Liver	Chipmunk	Liver	1	14,649,577	10,631
Chipmunk_2_Liver	Chipmunk	Liver	2	22,286,462	10,498
Bear_1_Liver	Bear	Liver	1	14,957,083	10,563

Method and provenance

How this page was calculated

Normalization

Matrix-total CPM

raw count / sum of all published matrix gene rows in the sample × 1,000,000. A gene is called detected at CPM ≥ 1.

Ranking

Descriptive mean expression

Top genes are ranked by mean CPM across the exact selected sample columns; no p-values are calculated.

Source integrity

GSE227359

SHA-256: 02ccd190468eb1709362fb90021f9cf97e48e464f7732a2d895a72c3a29d0d32