ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP020
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
735,029
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
105
Annotated cell-type groups
🫀
Tissues
50
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 71,602 | 9.7413843535425% | — | — | — |
| Excitatory neurons | 43,142 | 5.869428281061% | — | — | — |
| Inhibitory neurons | 34,065 | 4.6345110192931% | — | — | — |
| Microglia | 19,762 | 2.6886014021215% | — | — | — |
| Oligodendrocyte progenitor cells | 7,609 | 1.0351972507207% | — | — | — |
| Chromaffin cells | 6,310 | 0.85846952977366% | — | — | — |
| Rod cells | 6,249 | 0.850170537489% | — | — | — |
| Astrocytes | 3,914 | 0.53249599675659% | — | — | — |
| Amacrine cells | 3,061 | 0.41644615382522% | — | — | — |
| Bipolar cells | 2,666 | 0.36270677755572% | — | — | — |
| Granule cells | 2,214 | 0.30121260521694% | — | — | — |
| Muller cells | 1,769 | 0.24067077625509% | — | — | — |
| Glial cells | 776 | 0.10557406578516% | — | — | — |
| Cone cells | 765 | 0.10407752619284% | — | — | — |
| Schwann cells | 489 | 0.066527987331112% | — | — | — |
| Enteric neurons | 314 | 0.042719402907912% | — | — | — |
| Melanocytes | 306 | 0.041631010477138% | — | — | — |
| Ganglion cells | 284 | 0.038637931292507% | — | — | — |
| Horizontal cells | 132 | 0.017958475107785% | — | — | — |
| Enteric glial cells | 95 | 0.012924660115451% | — | — | — |
| T cells | 62,614 | 8.518575457567% | — | — | — |
| B cells | 38,002 | 5.1701361442882% | — | — | — |
| Monocytes | 20,884 | 2.8412484405377% | — | — | — |
| Plasma B cells | 18,578 | 2.5275193223669% | — | — | — |
| Macrophages | 14,915 | 2.0291716381258% | — | — | — |
| Goblet cells | 13,045 | 1.7747599074322% | — | — | — |
| Natural killer cells | 6,451 | 0.87765244636606% | — | — | — |
| Neutrophils | 6,074 | 0.8263619530658% | — | — | — |
| Natural killer T cells | 4,021 | 0.5470532455182% | — | — | — |
| Dendritic cells | 3,584 | 0.48759980898713% | — | — | — |
| Cycling B cells | 2,225 | 0.30270914480925% | — | — | — |
| Mast cells | 1,569 | 0.21346096548572% | — | — | — |
| Erythroid cells | 988 | 0.13441646520069% | — | — | — |
| Pancreas islet cells | 770 | 0.10475777146208% | — | — | — |
| Kupffer cells | 499 | 0.067888477869581% | — | — | — |
| Cycling T cells | 188 | 0.025577222123209% | — | — | — |
| Platelets | 174 | 0.023672535369353% | — | — | — |
| Club cells | 70 | 0.0095234337692799% | — | — | — |
| Common myeloid progenitors | 55 | 0.007482697961577% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 29 | 0.0039454225615588% | — | — | — |
| Hematopoietic stem and progenitor cells | 15 | 0.0020407358077028% | — | — | — |
| Enterocytes | 28,240 | 3.8420252806352% | — | — | — |
| Acinar cells | 20,317 | 2.7641086270066% | — | — | — |
| Mucous cells | 15,229 | 2.0718910410338% | — | — | — |
| Follicular cells | 10,052 | 1.3675650892686% | — | — | — |
| Glandular cells | 9,071 | 1.2341009674448% | — | — | — |
| Somatotropes | 5,678 | 0.77248652774244% | — | — | — |
| Proximal tubule cells | 5,280 | 0.71833900431139% | — | — | — |
| Hepatocytes | 5,004 | 0.68078946544966% | — | — | — |
| Urothelial cells | 4,766 | 0.64840979063411% | — | — | — |
| Glomerulosa cells | 3,698 | 0.50310940112567% | — | — | — |
| Fasciculata cells | 3,647 | 0.49617089937948% | — | — | — |
| Alveolar type 1 cells | 3,345 | 0.45508408511773% | — | — | — |
| Alveolar type 2 cells | 3,328 | 0.45277125120233% | — | — | — |
| Lactotropes | 2,503 | 0.34053078177868% | — | — | — |
| Corticotropes | 2,420 | 0.32923871030939% | — | — | — |
| Pancreas ductal cells | 2,339 | 0.31821873694779% | — | — | — |
| Taste cells | 1,946 | 0.26475145878598% | — | — | — |
| Serous cells | 1,632 | 0.22203205587807% | — | — | — |
| Cycling epithelial cells | 1,606 | 0.21849478047805% | — | — | — |
| Gonadotropes | 1,586 | 0.21577379940111% | — | — | — |
| Cycling gastric epithelial cell | 1,484 | 0.20189679590873% | — | — | — |
| Keratinocytes | 1,449 | 0.19713507902409% | — | — | — |
| Connecting tubule cells | 1,274 | 0.17332649460089% | — | — | — |
| Descending limb of loop of Henle cells | 996 | 0.13550485763147% | — | — | — |
| Retinal pigmentary epithelial cells | 814 | 0.11074392983134% | — | — | — |
| Distal convoluted tubule cells | 507 | 0.068976870300356% | — | — | — |
| Progenitor-like epithelial cells | 165 | 0.022448093884731% | — | — | — |
| Surface epithelial cells | 154 | 0.020951554292416% | — | — | — |
| Podocytes | 114 | 0.015509592138541% | — | — | — |
| Cholangiocytes | 105 | 0.01428515065392% | — | — | — |
| Sertoli cells | 91 | 0.012380463900064% | — | — | — |
| Chief cells | 84 | 0.011428120523136% | — | — | — |
| Peritubular myoid cells | 83 | 0.011292071469289% | — | — | — |
| Basal cells | 78 | 0.010611826200055% | — | — | — |
| Choroid plexus | 41 | 0.0055780112077211% | — | — | — |
| Ependymal cells | 33 | 0.0044896187769462% | — | — | — |
| Neuroendocrine cells | 10 | 0.0013604905384686% | — | — | — |
| Fibroblasts | 34,668 | 4.7165485987628% | — | — | — |
| Homeostatic chondrocytes | 21,138 | 2.8758049002148% | — | — | — |
| Other stromal cells | 7,959 | 1.0828144195671% | — | — | — |
| Adipocytes | 7,587 | 1.0322041715361% | — | — | — |
| Granulosa cells | 6,738 | 0.91669852482011% | — | — | — |
| Endoneurial cells | 4,108 | 0.55888951320288% | — | — | — |
| Epineurial cells | 3,914 | 0.53249599675659% | — | — | — |
| Pericytes | 3,579 | 0.48691956371789% | — | — | — |
| Mesothelial cells | 2,984 | 0.40597037667902% | — | — | — |
| Mesenchymal cells | 2,031 | 0.27631562836296% | — | — | — |
| Stellate cells | 1,960 | 0.26665614553984% | — | — | — |
| Folliculostellate cells | 1,237 | 0.16829267960856% | — | — | — |
| Theca cells | 318 | 0.0432635991233% | — | — | — |
| Perineurial cells | 253 | 0.034420410623254% | — | — | — |
| Type II myonuclei | 27,467 | 3.7368593620116% | — | — | — |
| Smooth muscle cells | 20,048 | 2.7275114315217% | — | — | — |
| Cardiomyocytes | 5,338 | 0.72622984943451% | — | — | — |
| Type I myonuclei | 2,962 | 0.40297729749438% | — | — | — |
| Satellite cells | 591 | 0.080404990823491% | — | — | — |
| Spermatogonia | 4,480 | 0.60949976123391% | — | — | — |
| Spermatids | 1,185 | 0.16121812880852% | — | — | — |
| Spermatocytes | 1,058 | 0.14393989896997% | — | — | — |
| Spermatozoa | 212 | 0.028842399415533% | — | — | — |
| Endothelial cells | 29,721 | 4.0435139293824% | — | — | — |
| Ascending loop of Henle cells | 1,503 | 0.20448172793182% | — | — | — |
| Principal cells | 1,483 | 0.20176074685489% | — | — | — |
| Intercalated cells | 1,064 | 0.14475619329305% | — | — | — |
105 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Oligodendrocytes | 71602 | 9.7414 | Neural cells | #FF8A65 |
| celltype | T cells | 62614 | 8.5186 | Immune cells | #EC407A |
| celltype | Excitatory neurons | 43142 | 5.8694 | Neural cells | #F44336 |
| celltype | B cells | 38002 | 5.1701 | Immune cells | #66BB6A |
| celltype | Fibroblasts | 34668 | 4.7165 | Stromal cells | #4CAF50 |
| celltype | Inhibitory neurons | 34065 | 4.6345 | Neural cells | #AB47BC |
| celltype | Endothelial cells | 29721 | 4.0435 | Endothelial cells | #9CCC65 |
| celltype | Enterocytes | 28240 | 3.842 | Epithelial cells | #FFEE58 |
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