ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys01
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_sys/sys01/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
215,364
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
31
Annotated cell-type groups
🫀
Tissues
12
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Oligodendrocytes | 71,602 | 33.246967924073% | — | — | — |
| Excitatory neurons | 43,142 | 20.032131646886% | — | — | — |
| Inhibitory neurons | 34,065 | 15.817406808937% | — | — | — |
| Microglia | 19,511 | 9.0595456993741% | — | — | — |
| Oligodendrocyte progenitor cells | 7,609 | 3.5330881670103% | — | — | — |
| Rod cells | 6,249 | 2.9015991530618% | — | — | — |
| Astrocytes | 3,914 | 1.8173882357311% | — | — | — |
| Amacrine cells | 3,061 | 1.4213146115414% | — | — | — |
| Bipolar cells | 2,666 | 1.2379041994019% | — | — | — |
| Granule cells | 2,214 | 1.0280269682955% | — | — | — |
| Muller cells | 1,769 | 0.82140004829034% | — | — | — |
| Glial cells | 776 | 0.36032020207648% | — | — | — |
| Cone cells | 765 | 0.35521257034602% | — | — | — |
| Schwann cells | 295 | 0.13697739640794% | — | — | — |
| Ganglion cells | 284 | 0.13186976467748% | — | — | — |
| Melanocytes | 249 | 0.11561820917145% | — | — | — |
| Horizontal cells | 132 | 0.061291580765588% | — | — | — |
| Macrophages | 2,328 | 1.0809606062295% | — | — | — |
| Mast cells | 191 | 0.088687060047176% | — | — | — |
| T cells | 106 | 0.049218996675396% | — | — | — |
| Retinal pigmentary epithelial cells | 814 | 0.37796474805446% | — | — | — |
| Choroid plexus | 41 | 0.019037536449917% | — | — | — |
| Ependymal cells | 33 | 0.015322895191397% | — | — | — |
| Endoneurial cells | 4,108 | 1.9074682862503% | — | — | — |
| Epineurial cells | 3,914 | 1.8173882357311% | — | — | — |
| Adipocytes | 1,232 | 0.57205475381215% | — | — | — |
| Fibroblasts | 864 | 0.40118125592021% | — | — | — |
| Pericytes | 739 | 0.34313998625583% | — | — | — |
| Perineurial cells | 253 | 0.11747552980071% | — | — | — |
| Smooth muscle cells | 553 | 0.25677457699523% | — | — | — |
| Endothelial cells | 1,885 | 0.87526234653888% | — | — | — |
31 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Oligodendrocytes | 71602 | 33.247 | Neural cells | #FF8A65 |
| celltype | Excitatory neurons | 43142 | 20.0321 | Neural cells | #F44336 |
| celltype | Inhibitory neurons | 34065 | 15.8174 | Neural cells | #AB47BC |
| celltype | Microglia | 19511 | 9.0595 | Neural cells | #29B6F6 |
| celltype | Oligodendrocyte progenitor cells | 7609 | 3.5331 | Neural cells | #00ACC1 |
| celltype | Rod cells | 6249 | 2.9016 | Neural cells | #FF00FF |
| celltype | Endoneurial cells | 4108 | 1.9075 | Stromal cells | #2E8B57 |
| celltype | Astrocytes | 3914 | 1.8174 | Neural cells | #26A69A |
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