ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
101,155
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
21
Annotated cell-type groups
🫀
Tissues
6
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 31,644 | 31.282684988384% | — | — | — |
| B cells | 28,647 | 28.31990509614% | — | — | — |
| Monocytes | 17,647 | 17.445504423904% | — | — | — |
| Natural killer cells | 6,385 | 6.3120952992932% | — | — | — |
| Neutrophils | 6,074 | 6.0046463348327% | — | — | — |
| Macrophages | 1,951 | 1.9287232465029% | — | — | — |
| Cycling B cells | 1,802 | 1.7814245464881% | — | — | — |
| Plasma B cells | 1,287 | 1.2723048786516% | — | — | — |
| Natural killer T cells | 1,086 | 1.0735999209134% | — | — | — |
| Erythroid cells | 988 | 0.97671889674262% | — | — | — |
| Dendritic cells | 485 | 0.47946221145766% | — | — | — |
| Cycling T cells | 188 | 0.1858533933073% | — | — | — |
| Platelets | 174 | 0.17201324699718% | — | — | — |
| Common myeloid progenitors | 55 | 0.054372003361178% | — | — | — |
| Mast cells | 32 | 0.031634620137413% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 29 | 0.02866887449953% | — | — | — |
| Hematopoietic stem and progenitor cells | 15 | 0.014828728189412% | — | — | — |
| Other stromal cells | 88 | 0.086995205377885% | — | — | — |
| Adipocytes | 44 | 0.043497602688943% | — | — | — |
| Smooth muscle cells | 659 | 0.65147545845485% | — | — | — |
| Endothelial cells | 1,875 | 1.8535910236765% | — | — | — |
21 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 31644 | 31.2827 | Immune cells | #EC407A |
| celltype | B cells | 28647 | 28.3199 | Immune cells | #66BB6A |
| celltype | Monocytes | 17647 | 17.4455 | Immune cells | #8D6E63 |
| celltype | Natural killer cells | 6385 | 6.3121 | Immune cells | #DB7093 |
| celltype | Neutrophils | 6074 | 6.0046 | Immune cells | #EF5350 |
| celltype | Macrophages | 1951 | 1.9287 | Immune cells | #78909C |
| celltype | Endothelial cells | 1875 | 1.8536 | Endothelial cells | #9CCC65 |
| celltype | Cycling B cells | 1802 | 1.7814 | Immune cells | #D4E157 |
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