ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
196,930
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
41
Annotated cell-type groups
🫀
Tissues
15
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric neurons | 314 | 0.15944751942315% | — | — | — |
| Enteric glial cells | 95 | 0.048240491545219% | — | — | — |
| Schwann cells | 37 | 0.018788401970243% | — | — | — |
| T cells | 28,378 | 14.410196516529% | — | — | — |
| Plasma B cells | 17,291 | 8.7802772558777% | — | — | — |
| Goblet cells | 13,045 | 6.6241811811304% | — | — | — |
| B cells | 9,355 | 4.7504189305845% | — | — | — |
| Natural killer T cells | 2,639 | 1.3400700756614% | — | — | — |
| Dendritic cells | 2,585 | 1.3126491646778% | — | — | — |
| Macrophages | 2,248 | 1.1415223683542% | — | — | — |
| Monocytes | 1,804 | 0.91606154471132% | — | — | — |
| Mast cells | 1,087 | 0.55197278220688% | — | — | — |
| Pancreas islet cells | 770 | 0.3910018788402% | — | — | — |
| Kupffer cells | 499 | 0.25338952927436% | — | — | — |
| Cycling B cells | 423 | 0.21479713603819% | — | — | — |
| Natural killer cells | 66 | 0.033514446757731% | — | — | — |
| Enterocytes | 28,240 | 14.340120855126% | — | — | — |
| Acinar cells | 20,317 | 10.316863860255% | — | — | — |
| Mucous cells | 15,229 | 7.7332046920225% | — | — | — |
| Glandular cells | 9,071 | 4.6062052505967% | — | — | — |
| Hepatocytes | 5,004 | 2.5410044178134% | — | — | — |
| Pancreas ductal cells | 2,339 | 1.1877316813081% | — | — | — |
| Taste cells | 1,946 | 0.98816838470523% | — | — | — |
| Serous cells | 1,632 | 0.82872086528208% | — | — | — |
| Cycling epithelial cells | 1,606 | 0.81551820443813% | — | — | — |
| Cycling gastric epithelial cell | 1,484 | 0.75356725740111% | — | — | — |
| Cholangiocytes | 105 | 0.053318438023663% | — | — | — |
| Chief cells | 84 | 0.042654750418931% | — | — | — |
| Basal cells | 78 | 0.039607982531864% | — | — | — |
| Neuroendocrine cells | 10 | 0.0050779464784441% | — | — | — |
| Fibroblasts | 13,627 | 6.9197176661758% | — | — | — |
| Stellate cells | 1,960 | 0.99527750977505% | — | — | — |
| Other stromal cells | 1,113 | 0.56517544305083% | — | — | — |
| Adipocytes | 140 | 0.071091250698218% | — | — | — |
| Pericytes | 59 | 0.02995988422282% | — | — | — |
| Smooth muscle cells | 4,909 | 2.4927639262682% | — | — | — |
| Type II myonuclei | 381 | 0.19346976082872% | — | — | — |
| Type I myonuclei | 132 | 0.067028893515462% | — | — | — |
| Satellite cells | 46 | 0.023358553800843% | — | — | — |
| Endothelial cells | 6,466 | 3.283400192962% | — | — | — |
| Intercalated cells | 316 | 0.16046310871883% | — | — | — |
41 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 28378 | 14.4102 | Immune cells | #EC407A |
| celltype | Enterocytes | 28240 | 14.3401 | Epithelial cells | #FFEE58 |
| celltype | Acinar cells | 20317 | 10.3169 | Epithelial cells | #4CAF50 |
| celltype | Plasma B cells | 17291 | 8.7803 | Immune cells | #F44336 |
| celltype | Mucous cells | 15229 | 7.7332 | Epithelial cells | #D4E157 |
| celltype | Fibroblasts | 13627 | 6.9197 | Stromal cells | #4CAF50 |
| celltype | Goblet cells | 13045 | 6.6242 | Immune cells | #E91E63 |
| celltype | B cells | 9355 | 4.7504 | Immune cells | #66BB6A |
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