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ATLAS / POST-QC DATASET

Atlas / Post-QC Dataset Statistics System › sys06

Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.

Species: SP020 System: sys06 Generated: 2026-08-08 07:47
๐Ÿ“ analysis_results_v2/SP020_sys/sys06/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
🔬
20,266
Total Cells
🧬
17,305
Total Genes
🔷
16
Cell Types
🫀
2
Tissues
📦
N/A
Samples
N/A: Not exported by the post-QC descriptive statistics pipeline.
📊
N/A
Clusters
N/A: Not exported by the post-QC descriptive statistics pipeline.
⚡
N/A
Mito %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🧪
N/A
Ribo %
N/A: Not exported by the post-QC descriptive statistics pipeline.
🚫
N/A
Cells Filtered
N/A: Validated Raw Count Thresholds Not Available.
✅
N/A
Pass Rate
N/A: Validated Raw Count Thresholds Not Available.
๐Ÿ“‹ Overview ๐Ÿ“Š QC Metrics ๐Ÿ—บ๏ธ UMAP ๐Ÿงฉ Composition ๐Ÿงฌ Markers ๐Ÿ“ˆ Gene Stats ๐Ÿ“ Data 2
📋

Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable

🔬
Total Cells
20,266
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
16
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.

QC filtering metrics: N/A

Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.

๐Ÿ”ท Cell Type / Cluster Breakdown

NameCells%Med GenesMed CountsMed Mito%
Monocytes1,1265.5561038192046%———
Macrophages270.13322806671272%———
Progenitor-like epithelial cells1650.81417151879996%———
Surface epithelial cells1540.75989341754663%———
Sertoli cells910.44902792855028%———
Peritubular myoid cells830.40955294582059%———
Granulosa cells6,73833.247804204086%———
Fibroblasts1,0365.1120102634955%———
Theca cells3181.5691305635054%———
Mesothelial cells2761.3618869041745%———
Smooth muscle cells2,98714.7389716767%———
Spermatogonia4,48022.105990328629%———
Spermatids1,1855.8472318168361%———
Spermatocytes1,0585.2205664660022%———
Spermatozoa2121.0460870423369%———
Endothelial cells3301.6283430375999%———
16 groups
๐Ÿ“Š

QC MetricsInteractive boxplots and scatter plots

๐Ÿ“ Distribution Summary

MetricMinQ1MedianMeanQ3MaxStd

๐ŸŽป Genes/Cell BOXPLOT

๐ŸŽป Counts/Cell BOXPLOT

๐ŸŽป Mito % BOXPLOT

๐ŸŽป Ribo % BOXPLOT

๐Ÿ”ฌ Genes vs Counts SCATTER

๐Ÿ—บ๏ธ

UMAP EmbeddingInteractive 2D projection colored by cell type / cluster

๐Ÿ—บ๏ธ UMAP by Group INTERACTIVE

๐Ÿงฉ

Cell CompositionCell type proportions overall and per sample

๐Ÿฅง Overall PIE

๐Ÿ“Š Per-sample STACKED BAR

๐Ÿงฌ

Marker GenesTop markers per cluster and expression heatmap

๐Ÿ”ฅ Expression Heatmap Z-SCORE

๐Ÿ“ˆ

Gene StatisticsTop expressed genes and detection rates

Limited gene-statistics scope: mapped longevity genes only

Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.

๐Ÿ† Top Expressed BAR

๐Ÿ“

Data FilesDownload QC data tables

๐Ÿ“‹ Available Files

FileDescriptionAction
composition.csvComposition๐Ÿ“ฅ Download
gene_stats.csvGene Stats๐Ÿ“ฅ Download

๐Ÿ“‹ Preview: composition.csv

๐Ÿ“ฅ Full CSV
groupinggroupcountpctcategorycolor
celltypeGranulosa cells673833.2478Stromal cells#00FF00
celltypeSpermatogonia448022.106Germ cells#FF7043
celltypeSmooth muscle cells298714.739Muscle cells#66BB6A
celltypeSpermatids11855.8472Germ cells#2E7D32
celltypeMonocytes11265.5561Immune cells#8D6E63
celltypeSpermatocytes10585.2206Germ cells#78909C
celltypeFibroblasts10365.112Stromal cells#4CAF50
celltypeEndothelial cells3301.6283Endothelial cells#9CCC65
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