ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
52,420
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
21
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 6,310 | 12.037390309042% | — | — | — |
| Microglia | 251 | 0.47882487600153% | — | — | — |
| Macrophages | 1,111 | 2.1194200686761% | — | — | — |
| Dendritic cells | 463 | 0.88325066768409% | — | — | — |
| Natural killer T cells | 296 | 0.56466997329264% | — | — | — |
| Monocytes | 116 | 0.2212895841282% | — | — | — |
| T cells | 39 | 0.074399084318962% | — | — | — |
| Follicular cells | 10,052 | 19.175887066005% | — | — | — |
| Somatotropes | 5,678 | 10.831743609309% | — | — | — |
| Glomerulosa cells | 3,698 | 7.0545593285006% | — | — | — |
| Fasciculata cells | 3,647 | 6.9572682182373% | — | — | — |
| Lactotropes | 2,503 | 4.7748950782144% | — | — | — |
| Corticotropes | 2,420 | 4.616558565433% | — | — | — |
| Gonadotropes | 1,586 | 3.0255627623045% | — | — | — |
| Adipocytes | 3,332 | 6.3563525371995% | — | — | — |
| Fibroblasts | 3,198 | 6.1007249141549% | — | — | — |
| Mesothelial cells | 1,284 | 2.4494467760397% | — | — | — |
| Folliculostellate cells | 1,237 | 2.3597863410912% | — | — | — |
| Other stromal cells | 884 | 1.6863792445631% | — | — | — |
| Smooth muscle cells | 762 | 1.4536436474628% | — | — | — |
| Endothelial cells | 3,553 | 6.7779473483403% | — | — | — |
21 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Follicular cells | 10052 | 19.1759 | Epithelial cells | #008B8B |
| celltype | Chromaffin cells | 6310 | 12.0374 | Neural cells | #FFCA28 |
| celltype | Somatotropes | 5678 | 10.8317 | Epithelial cells | #C71585 |
| celltype | Glomerulosa cells | 3698 | 7.0546 | Epithelial cells | #2F4F4F |
| celltype | Fasciculata cells | 3647 | 6.9573 | Epithelial cells | #4B0082 |
| celltype | Endothelial cells | 3553 | 6.7779 | Endothelial cells | #9CCC65 |
| celltype | Adipocytes | 3332 | 6.3564 | Stromal cells | #E91E63 |
| celltype | Fibroblasts | 3198 | 6.1007 | Stromal cells | #4CAF50 |
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