ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_sys/sys09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
24,887
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
17
Annotated cell-type groups
🫀
Tissues
2
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 1,276 | 5.1271748302327% | — | — | — |
| T cells | 490 | 1.9688994254028% | — | — | — |
| Monocytes | 191 | 0.76746895969783% | — | — | — |
| Proximal tubule cells | 5,280 | 21.215895849239% | — | — | — |
| Urothelial cells | 4,766 | 19.150560533612% | — | — | — |
| Connecting tubule cells | 1,274 | 5.1191385060473% | — | — | — |
| Descending limb of loop of Henle cells | 996 | 4.0020894442882% | — | — | — |
| Distal convoluted tubule cells | 507 | 2.037208180978% | — | — | — |
| Podocytes | 114 | 0.45807047856311% | — | — | — |
| Other stromal cells | 2,122 | 8.526539960622% | — | — | — |
| Fibroblasts | 1,043 | 4.1909430626431% | — | — | — |
| Mesothelial cells | 335 | 1.3460843010407% | — | — | — |
| Smooth muscle cells | 1,897 | 7.6224534897738% | — | — | — |
| Endothelial cells | 862 | 3.4636557238719% | — | — | — |
| Ascending loop of Henle cells | 1,503 | 6.0392976252662% | — | — | — |
| Principal cells | 1,483 | 5.958934383413% | — | — | — |
| Intercalated cells | 748 | 3.0055852453088% | — | — | — |
17 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Proximal tubule cells | 5280 | 21.2159 | Epithelial cells | #FFA726 |
| celltype | Urothelial cells | 4766 | 19.1506 | Epithelial cells | #29B6F6 |
| celltype | Other stromal cells | 2122 | 8.5265 | Stromal cells | #008B8B |
| celltype | Smooth muscle cells | 1897 | 7.6225 | Muscle cells | #66BB6A |
| celltype | Ascending loop of Henle cells | 1503 | 6.0393 | Other | #AB47BC |
| celltype | Principal cells | 1483 | 5.9589 | Other | #42A5F5 |
| celltype | Macrophages | 1276 | 5.1272 | Immune cells | #78909C |
| celltype | Connecting tubule cells | 1274 | 5.1191 | Epithelial cells | #8D6E63 |
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