ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis03
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_tis/sys05tis03/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
31,655
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
10
Annotated cell-type groups
🫀
Tissues
3
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric neurons | 272 | 0.85926393934607% | — | — | — |
| T cells | 8,638 | 27.287948191439% | — | — | — |
| B cells | 4,710 | 14.879166008529% | — | — | — |
| Plasma B cells | 3,178 | 10.039488232507% | — | — | — |
| Monocytes | 283 | 0.89401358395198% | — | — | — |
| Macrophages | 114 | 0.36013268046122% | — | — | — |
| Mucous cells | 12,818 | 40.492813141684% | — | — | — |
| Cycling gastric epithelial cell | 1,484 | 4.688042963197% | — | — | — |
| Chief cells | 84 | 0.26536092244511% | — | — | — |
| Other stromal cells | 74 | 0.23377033643974% | — | — | — |
10 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Mucous cells | 12818 | 40.4928 | Epithelial cells | #D4E157 |
| celltype | T cells | 8638 | 27.2879 | Immune cells | #EC407A |
| celltype | B cells | 4710 | 14.8792 | Immune cells | #66BB6A |
| celltype | Plasma B cells | 3178 | 10.0395 | Immune cells | #F44336 |
| celltype | Cycling gastric epithelial cell | 1484 | 4.688 | Epithelial cells | #7E57C2 |
| celltype | Monocytes | 283 | 0.894 | Immune cells | #8D6E63 |
| celltype | Enteric neurons | 272 | 0.8593 | Neural cells | #9400D3 |
| celltype | Macrophages | 114 | 0.3601 | Immune cells | #78909C |
First 8 rows