ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_tis/sys05tis07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
85,580
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
18
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 95 | 0.11100724468334% | — | — | — |
| Enteric neurons | 42 | 0.04907688712316% | — | — | — |
| T cells | 16,199 | 18.928487964478% | — | — | — |
| Plasma B cells | 13,349 | 15.598270623978% | — | — | — |
| Goblet cells | 12,196 | 14.250993222716% | — | — | — |
| B cells | 4,469 | 5.2220144893667% | — | — | — |
| Macrophages | 1,143 | 1.3355924281374% | — | — | — |
| Mast cells | 1,063 | 1.2421126431409% | — | — | — |
| Monocytes | 950 | 1.1100724468334% | — | — | — |
| Cycling B cells | 392 | 0.45805094648282% | — | — | — |
| Natural killer cells | 66 | 0.077120822622108% | — | — | — |
| Enterocytes | 20,496 | 23.949520916102% | — | — | — |
| Cycling epithelial cells | 809 | 0.94531432577705% | — | — | — |
| Neuroendocrine cells | 10 | 0.011684973124562% | — | — | — |
| Fibroblasts | 13,627 | 15.92311287684% | — | — | — |
| Pericytes | 59 | 0.068941341434915% | — | — | — |
| Smooth muscle cells | 327 | 0.38209862117317% | — | — | — |
| Endothelial cells | 288 | 0.33652722598738% | — | — | — |
18 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Enterocytes | 20496 | 23.9495 | Epithelial cells | #FFEE58 |
| celltype | T cells | 16199 | 18.9285 | Immune cells | #EC407A |
| celltype | Fibroblasts | 13627 | 15.9231 | Stromal cells | #4CAF50 |
| celltype | Plasma B cells | 13349 | 15.5983 | Immune cells | #F44336 |
| celltype | Goblet cells | 12196 | 14.251 | Immune cells | #E91E63 |
| celltype | B cells | 4469 | 5.222 | Immune cells | #66BB6A |
| celltype | Macrophages | 1143 | 1.3356 | Immune cells | #78909C |
| celltype | Mast cells | 1063 | 1.2421 | Immune cells | #FF7043 |
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