ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys10tis02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP020_tis/sys10tis02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
14,675
Cells represented in this release
🧬
Total Genes
17,305
Genes represented in the source matrix
🔷
Cell Types
11
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Schwann cells | 157 | 1.0698466780239% | — | — | — |
| Melanocytes | 57 | 0.38841567291312% | — | — | — |
| Macrophages | 917 | 6.2487223168654% | — | — | — |
| T cells | 526 | 3.5843270868825% | — | — | — |
| Mast cells | 183 | 1.2470187393526% | — | — | — |
| Keratinocytes | 1,449 | 9.8739352640545% | — | — | — |
| Fibroblasts | 6,928 | 47.209540034072% | — | — | — |
| Pericytes | 1,949 | 13.281090289608% | — | — | — |
| Adipocytes | 105 | 0.71550255536627% | — | — | — |
| Smooth muscle cells | 397 | 2.7052810902896% | — | — | — |
| Endothelial cells | 2,007 | 13.676320272572% | — | — | — |
11 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Fibroblasts | 6928 | 47.2095 | Stromal cells | #4CAF50 |
| celltype | Endothelial cells | 2007 | 13.6763 | Endothelial cells | #9CCC65 |
| celltype | Pericytes | 1949 | 13.2811 | Stromal cells | #FFEE58 |
| celltype | Keratinocytes | 1449 | 9.8739 | Epithelial cells | #66BB6A |
| celltype | Macrophages | 917 | 6.2487 | Immune cells | #78909C |
| celltype | T cells | 526 | 3.5843 | Immune cells | #EC407A |
| celltype | Smooth muscle cells | 397 | 2.7053 | Muscle cells | #66BB6A |
| celltype | Mast cells | 183 | 1.247 | Immune cells | #FF7043 |
First 8 rows