ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP021
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP021/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
659,295
Cells represented in this release
🧬
Total Genes
16,663
Genes represented in the source matrix
🔷
Cell Types
106
Annotated cell-type groups
🫀
Tissues
41
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Excitatory neurons | 54,980 | 8.3392108236829% | — | — | — |
| Oligodendrocytes | 54,407 | 8.2522998050948% | — | — | — |
| Inhibitory neurons | 37,561 | 5.6971461940406% | — | — | — |
| Microglia | 13,655 | 2.0711517605928% | — | — | — |
| Astrocytes | 8,671 | 1.3151927437642% | — | — | — |
| Oligodendrocyte progenitor cells | 7,353 | 1.1152822332947% | — | — | — |
| Granule cells | 7,291 | 1.1058782487354% | — | — | — |
| Rod cells | 4,808 | 0.7292638348539% | — | — | — |
| Chromaffin cells | 3,438 | 0.52146611152822% | — | — | — |
| Amacrine cells | 2,777 | 0.42120750195284% | — | — | — |
| Bipolar cells | 1,704 | 0.25845789820945% | — | — | — |
| Muller cells | 1,323 | 0.20066889632107% | — | — | — |
| Purkinje cells | 1,031 | 0.15637916259034% | — | — | — |
| Melanocytes | 543 | 0.082360703478716% | — | — | — |
| Schwann cells | 388 | 0.058850742080556% | — | — | — |
| Ganglion cells | 307 | 0.046564891285388% | — | — | — |
| Enteric glial cells | 268 | 0.04064948164327% | — | — | — |
| Cone cells | 162 | 0.024571701590335% | — | — | — |
| Horizontal cells | 156 | 0.023661638568471% | — | — | — |
| Glial cells | 110 | 0.016684488734178% | — | — | — |
| Enteric neurons | 14 | 0.0021234803843499% | — | — | — |
| T cells | 47,893 | 7.2642747176909% | — | — | — |
| B cells | 24,581 | 3.7283765234076% | — | — | — |
| Macrophages | 17,359 | 2.6329639994236% | — | — | — |
| Monocytes | 17,189 | 2.6071788804708% | — | — | — |
| Natural killer cells | 9,162 | 1.3896662343867% | — | — | — |
| Natural killer T cells | 8,111 | 1.2302535283902% | — | — | — |
| Plasma B cells | 6,988 | 1.0599200661312% | — | — | — |
| Neutrophils | 6,361 | 0.96481848034643% | — | — | — |
| Dendritic cells | 5,339 | 0.80980441228888% | — | — | — |
| Cycling B cells | 2,469 | 0.37449093349714% | — | — | — |
| Erythroid cells | 1,962 | 0.29759060814961% | — | — | — |
| Kupffer cells | 1,527 | 0.23161103906446% | — | — | — |
| Pancreas islet cells | 1,184 | 0.17958576964788% | — | — | — |
| Mast cells | 1,032 | 0.15653083976065% | — | — | — |
| Goblet cells | 1,006 | 0.15258723333257% | — | — | — |
| Club cells | 595 | 0.090247916334873% | — | — | — |
| Cycling T cells | 431 | 0.065372860403916% | — | — | — |
| Common myeloid progenitors | 321 | 0.048688371669738% | — | — | — |
| Platelets | 168 | 0.025481764612199% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 23 | 0.0034885749171463% | — | — | — |
| Hematopoietic stem and progenitor cells | 15 | 0.0022751575546607% | — | — | — |
| Enterocytes | 21,819 | 3.3094441790094% | — | — | — |
| Acinar cells | 17,611 | 2.6711866463419% | — | — | — |
| Follicular cells | 16,180 | 2.4541366156273% | — | — | — |
| Glandular cells | 8,875 | 1.3461348865076% | — | — | — |
| Urothelial cells | 8,783 | 1.332180586839% | — | — | — |
| Keratinocytes | 8,168 | 1.2388991270979% | — | — | — |
| Glomerulosa cells | 5,984 | 0.90763618713929% | — | — | — |
| Fasciculata cells | 5,975 | 0.9062710926065% | — | — | — |
| Hepatocytes | 5,760 | 0.87366050098969% | — | — | — |
| Somatotropes | 5,311 | 0.80555745152018% | — | — | — |
| Pancreas ductal cells | 4,637 | 0.70332703873077% | — | — | — |
| Mucous cells | 4,111 | 0.62354484714733% | — | — | — |
| Cycling epithelial cells | 3,558 | 0.53966737196551% | — | — | — |
| Alveolar type 2 cells | 2,719 | 0.41241022607482% | — | — | — |
| Serous cells | 2,406 | 0.36493527176757% | — | — | — |
| Proximal tubule cells | 2,034 | 0.30851136441199% | — | — | — |
| Lactotropes | 1,982 | 0.30062415155583% | — | — | — |
| Corticotropes | 1,877 | 0.2846980486732% | — | — | — |
| Gonadotropes | 1,831 | 0.27772089883891% | — | — | — |
| Sertoli cells | 1,447 | 0.2194768654396% | — | — | — |
| Taste cells | 1,412 | 0.21416816447872% | — | — | — |
| Retinal pigmentary epithelial cells | 1,137 | 0.17245694264328% | — | — | — |
| Alveolar type 1 cells | 697 | 0.10571898770657% | — | — | — |
| Peritubular myoid cells | 659 | 0.099955255234758% | — | — | — |
| Ciliated cells | 319 | 0.048385017329117% | — | — | — |
| Parietal cells | 297 | 0.045048119582281% | — | — | — |
| Chief cells | 278 | 0.042166253346378% | — | — | — |
| Ependymal cells | 276 | 0.041862899005756% | — | — | — |
| Distal convoluted tubule cells | 269 | 0.040801158813581% | — | — | — |
| Cholangiocytes | 236 | 0.035795812193328% | — | — | — |
| Basal cells | 172 | 0.026088473293442% | — | — | — |
| Descending limb of loop of Henle cells | 167 | 0.025330087441889% | — | — | — |
| Cycling glandular cells | 90 | 0.013650945327964% | — | — | — |
| Cycling gastric epithelial cell | 58 | 0.0087972758780212% | — | — | — |
| Melanotropes | 48 | 0.0072805041749141% | — | — | — |
| Podocytes | 16 | 0.0024268347249714% | — | — | — |
| Fibroblasts | 18,581 | 2.8183135015433% | — | — | — |
| Homeostatic chondrocytes | 13,664 | 2.0725168551256% | — | — | — |
| Other stromal cells | 12,488 | 1.8941445028402% | — | — | — |
| Adipocytes | 8,251 | 1.2514883322337% | — | — | — |
| Pericytes | 8,119 | 1.2314669457527% | — | — | — |
| Epineurial cells | 5,146 | 0.78053071841892% | — | — | — |
| Folliculostellate cells | 2,203 | 0.3341448061945% | — | — | — |
| Stellate cells | 1,736 | 0.26331156765939% | — | — | — |
| Endoneurial cells | 1,569 | 0.23798148021751% | — | — | — |
| Mesothelial cells | 1,112 | 0.16866501338551% | — | — | — |
| Mesenchymal cells | 419 | 0.063552734360188% | — | — | — |
| Perineurial cells | 393 | 0.059609127932109% | — | — | — |
| Leydig cells | 65 | 0.0098590160701962% | — | — | — |
| Type II myonuclei | 22,816 | 3.4606663178092% | — | — | — |
| Smooth muscle cells | 22,338 | 3.3881646304007% | — | — | — |
| Cardiomyocytes | 7,074 | 1.072964302778% | — | — | — |
| Type I myonuclei | 4,663 | 0.70727064515884% | — | — | — |
| Satellite cells | 896 | 0.1359027445984% | — | — | — |
| Neuromuscular junctions | 29 | 0.0043986379390106% | — | — | — |
| Spermatogonia | 3,320 | 0.50356820543156% | — | — | — |
| Spermatocytes | 2,914 | 0.44198727428541% | — | — | — |
| Spermatids | 1,511 | 0.22918420433948% | — | — | — |
| Spermatozoa | 528 | 0.080085545924055% | — | — | — |
| Endothelial cells | 26,677 | 4.0462918723788% | — | — | — |
| Principal cells | 353 | 0.053542041119681% | — | — | — |
| Intercalated cells | 264 | 0.040042772962028% | — | — | — |
| Ascending loop of Henle cells | 166 | 0.025178410271578% | — | — | — |
| Colonic stem cells | 138 | 0.020931449502878% | — | — | — |
106 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Excitatory neurons | 54980 | 8.3392 | Neural cells | #F44336 |
| celltype | Oligodendrocytes | 54407 | 8.2523 | Neural cells | #FF8A65 |
| celltype | T cells | 47893 | 7.2643 | Immune cells | #8D6E63 |
| celltype | Inhibitory neurons | 37561 | 5.6971 | Neural cells | #AB47BC |
| celltype | Endothelial cells | 26677 | 4.0463 | Endothelial cells | #9CCC65 |
| celltype | B cells | 24581 | 3.7284 | Immune cells | #66BB6A |
| celltype | Type II myonuclei | 22816 | 3.4607 | Muscle cells | #BC8F8F |
| celltype | Smooth muscle cells | 22338 | 3.3882 | Muscle cells | #78909C |
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