ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys02
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP021_sys/sys02/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
92,146
Cells represented in this release
🧬
Total Genes
16,663
Genes represented in the source matrix
🔷
Cell Types
20
Annotated cell-type groups
🫀
Tissues
5
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| T cells | 28,215 | 30.619885833351% | — | — | — |
| B cells | 20,539 | 22.289627330541% | — | — | — |
| Monocytes | 13,758 | 14.930653528097% | — | — | — |
| Natural killer cells | 8,953 | 9.7161027065743% | — | — | — |
| Neutrophils | 6,361 | 6.9031753955679% | — | — | — |
| Natural killer T cells | 3,792 | 4.1152084735094% | — | — | — |
| Macrophages | 2,656 | 2.8823823063399% | — | — | — |
| Cycling B cells | 2,036 | 2.2095370390467% | — | — | — |
| Erythroid cells | 1,962 | 2.1292297006924% | — | — | — |
| Plasma B cells | 980 | 1.0635296160441% | — | — | — |
| Cycling T cells | 384 | 0.41672997200096% | — | — | — |
| Common myeloid progenitors | 321 | 0.34836021096955% | — | — | — |
| Mast cells | 262 | 0.28433138714648% | — | — | — |
| Dendritic cells | 174 | 0.18883076856293% | — | — | — |
| Platelets | 168 | 0.18231936275042% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 23 | 0.024960388947974% | — | — | — |
| Hematopoietic stem and progenitor cells | 15 | 0.016278514531287% | — | — | — |
| Other stromal cells | 93 | 0.10092679009398% | — | — | — |
| Smooth muscle cells | 475 | 0.51548629349076% | — | — | — |
| Endothelial cells | 979 | 1.062444381742% | — | — | — |
20 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | T cells | 28215 | 30.6199 | Immune cells | #8D6E63 |
| celltype | B cells | 20539 | 22.2896 | Immune cells | #66BB6A |
| celltype | Monocytes | 13758 | 14.9307 | Immune cells | #D4E157 |
| celltype | Natural killer cells | 8953 | 9.7161 | Immune cells | #DB7093 |
| celltype | Neutrophils | 6361 | 6.9032 | Immune cells | #EF5350 |
| celltype | Natural killer T cells | 3792 | 4.1152 | Immune cells | #FF1493 |
| celltype | Macrophages | 2656 | 2.8824 | Immune cells | #FF7043 |
| celltype | Cycling B cells | 2036 | 2.2095 | Immune cells | #D4E157 |
First 8 rows