ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP021_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
148,434
Cells represented in this release
🧬
Total Genes
16,663
Genes represented in the source matrix
🔷
Cell Types
44
Annotated cell-type groups
🫀
Tissues
10
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Enteric glial cells | 268 | 0.18055162563833% | — | — | — |
| Schwann cells | 67 | 0.045137906409583% | — | — | — |
| Enteric neurons | 14 | 0.0094318013393158% | — | — | — |
| T cells | 16,281 | 10.968511257529% | — | — | — |
| Plasma B cells | 6,008 | 4.0475901747578% | — | — | — |
| B cells | 3,972 | 2.675936779983% | — | — | — |
| Dendritic cells | 3,508 | 2.3633399355943% | — | — | — |
| Monocytes | 3,431 | 2.311465028228% | — | — | — |
| Natural killer T cells | 2,653 | 1.7873263538003% | — | — | — |
| Macrophages | 2,419 | 1.6296805314146% | — | — | — |
| Kupffer cells | 1,527 | 1.0287400460811% | — | — | — |
| Pancreas islet cells | 1,184 | 0.79766091326785% | — | — | — |
| Goblet cells | 1,006 | 0.67774229623941% | — | — | — |
| Cycling B cells | 433 | 0.29171214142312% | — | — | — |
| Mast cells | 344 | 0.2317528329089% | — | — | — |
| Natural killer cells | 89 | 0.059959308514222% | — | — | — |
| Cycling T cells | 47 | 0.031663904496274% | — | — | — |
| Enterocytes | 21,819 | 14.699462387324% | — | — | — |
| Acinar cells | 17,611 | 11.864532384764% | — | — | — |
| Glandular cells | 8,875 | 5.9790883490305% | — | — | — |
| Hepatocytes | 5,760 | 3.8805125510328% | — | — | — |
| Pancreas ductal cells | 4,637 | 3.1239473436005% | — | — | — |
| Mucous cells | 4,111 | 2.7695810932805% | — | — | — |
| Cycling epithelial cells | 3,558 | 2.3970249403775% | — | — | — |
| Serous cells | 2,406 | 1.620922430171% | — | — | — |
| Taste cells | 1,412 | 0.95126453507956% | — | — | — |
| Parietal cells | 297 | 0.20008892841263% | — | — | — |
| Chief cells | 278 | 0.18728862659498% | — | — | — |
| Cholangiocytes | 236 | 0.15899322257704% | — | — | — |
| Basal cells | 172 | 0.11587641645445% | — | — | — |
| Cycling glandular cells | 90 | 0.060633008609887% | — | — | — |
| Cycling gastric epithelial cell | 58 | 0.039074605548594% | — | — | — |
| Other stromal cells | 8,905 | 5.9992993519005% | — | — | — |
| Stellate cells | 1,736 | 1.1695433660752% | — | — | — |
| Fibroblasts | 873 | 0.58814018351591% | — | — | — |
| Adipocytes | 173 | 0.11655011655012% | — | — | — |
| Smooth muscle cells | 6,768 | 4.5596022474635% | — | — | — |
| Type II myonuclei | 4,599 | 3.0983467399652% | — | — | — |
| Satellite cells | 307 | 0.20682592936928% | — | — | — |
| Type I myonuclei | 197 | 0.13271891884609% | — | — | — |
| Neuromuscular junctions | 29 | 0.019537302774297% | — | — | — |
| Endothelial cells | 10,042 | 6.7652963606721% | — | — | — |
| Colonic stem cells | 138 | 0.092970613201827% | — | — | — |
| Intercalated cells | 96 | 0.06467520918388% | — | — | — |
44 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Enterocytes | 21819 | 14.6995 | Epithelial cells | #FFEE58 |
| celltype | Acinar cells | 17611 | 11.8645 | Epithelial cells | #4CAF50 |
| celltype | T cells | 16281 | 10.9685 | Immune cells | #8D6E63 |
| celltype | Endothelial cells | 10042 | 6.7653 | Endothelial cells | #9CCC65 |
| celltype | Other stromal cells | 8905 | 5.9993 | Stromal cells | #008B8B |
| celltype | Glandular cells | 8875 | 5.9791 | Epithelial cells | #008080 |
| celltype | Smooth muscle cells | 6768 | 4.5596 | Muscle cells | #78909C |
| celltype | Plasma B cells | 6008 | 4.0476 | Immune cells | #4CAF50 |
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