ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys07
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP021_sys/sys07/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
69,047
Cells represented in this release
🧬
Total Genes
16,663
Genes represented in the source matrix
🔷
Cell Types
22
Annotated cell-type groups
🫀
Tissues
4
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Chromaffin cells | 3,438 | 4.9792170550495% | — | — | — |
| Microglia | 290 | 0.420003765551% | — | — | — |
| Macrophages | 2,048 | 2.9660955580981% | — | — | — |
| Natural killer T cells | 1,370 | 1.9841557200168% | — | — | — |
| Dendritic cells | 1,201 | 1.7393949049198% | — | — | — |
| T cells | 158 | 0.22882963778296% | — | — | — |
| B cells | 70 | 0.10138021927093% | — | — | — |
| Follicular cells | 16,180 | 23.433313540052% | — | — | — |
| Glomerulosa cells | 5,984 | 8.6665604588179% | — | — | — |
| Fasciculata cells | 5,975 | 8.6535258591974% | — | — | — |
| Somatotropes | 5,311 | 7.6918620649702% | — | — | — |
| Lactotropes | 1,982 | 2.8705084942141% | — | — | — |
| Corticotropes | 1,877 | 2.7184381653077% | — | — | — |
| Gonadotropes | 1,831 | 2.6518168783582% | — | — | — |
| Melanotropes | 48 | 0.069517864642924% | — | — | — |
| Adipocytes | 7,361 | 10.660854200762% | — | — | — |
| Fibroblasts | 5,249 | 7.6020681564731% | — | — | — |
| Folliculostellate cells | 2,203 | 3.1905803293409% | — | — | — |
| Mesothelial cells | 584 | 0.84580068648891% | — | — | — |
| Other stromal cells | 233 | 0.33745130128753% | — | — | — |
| Smooth muscle cells | 1,384 | 2.004431763871% | — | — | — |
| Endothelial cells | 4,270 | 6.1841933755268% | — | — | — |
22 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Follicular cells | 16180 | 23.4333 | Epithelial cells | #008B8B |
| celltype | Adipocytes | 7361 | 10.6609 | Stromal cells | #E91E63 |
| celltype | Glomerulosa cells | 5984 | 8.6666 | Epithelial cells | #2F4F4F |
| celltype | Fasciculata cells | 5975 | 8.6535 | Epithelial cells | #4B0082 |
| celltype | Somatotropes | 5311 | 7.6919 | Epithelial cells | #C71585 |
| celltype | Fibroblasts | 5249 | 7.6021 | Stromal cells | #4CAF50 |
| celltype | Endothelial cells | 4270 | 6.1842 | Endothelial cells | #9CCC65 |
| celltype | Chromaffin cells | 3438 | 4.9792 | Neural cells | #5C6BC0 |
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