ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Tissue › sys05tis09
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP021_tis/sys05tis09/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
18,914
Cells represented in this release
🧬
Total Genes
16,663
Genes represented in the source matrix
🔷
Cell Types
13
Annotated cell-type groups
🫀
Tissues
1
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Schwann cells | 67 | 0.354234958232% | — | — | — |
| Dendritic cells | 2,691 | 14.227556307497% | — | — | — |
| Macrophages | 728 | 3.8490007401925% | — | — | — |
| Cycling epithelial cells | 3,356 | 17.743470445173% | — | — | — |
| Taste cells | 1,412 | 7.4653695675161% | — | — | — |
| Other stromal cells | 4,503 | 23.807761446548% | — | — | — |
| Adipocytes | 173 | 0.91466638468859% | — | — | — |
| Type II myonuclei | 4,215 | 22.285079835043% | — | — | — |
| Smooth muscle cells | 318 | 1.6812942793698% | — | — | — |
| Satellite cells | 307 | 1.6231363011526% | — | — | — |
| Type I myonuclei | 197 | 1.0415565189806% | — | — | — |
| Neuromuscular junctions | 29 | 0.15332557893624% | — | — | — |
| Endothelial cells | 918 | 4.8535476366712% | — | — | — |
13 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Other stromal cells | 4503 | 23.8078 | Stromal cells | #008B8B |
| celltype | Type II myonuclei | 4215 | 22.2851 | Muscle cells | #BC8F8F |
| celltype | Cycling epithelial cells | 3356 | 17.7435 | Epithelial cells | #87CEFA |
| celltype | Dendritic cells | 2691 | 14.2276 | Immune cells | #00ACC1 |
| celltype | Taste cells | 1412 | 7.4654 | Epithelial cells | #FF1493 |
| celltype | Endothelial cells | 918 | 4.8535 | Endothelial cells | #9CCC65 |
| celltype | Macrophages | 728 | 3.849 | Immune cells | #FF7043 |
| celltype | Smooth muscle cells | 318 | 1.6813 | Muscle cells | #78909C |
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