ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP037
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP037/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
181,017
Cells represented in this release
🧬
Total Genes
16,630
Genes represented in the source matrix
🔷
Cell Types
49
Annotated cell-type groups
🫀
Tissues
17
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Macrophages | 4,974 | 2.7478082169078% | — | — | — |
| Kupffer cells | 1,140 | 0.62977510399576% | — | — | — |
| T cells | 638 | 0.35245308451692% | — | — | — |
| Mast cells | 609 | 0.33643248976615% | — | — | — |
| Pancreas islet cells | 352 | 0.19445687421623% | — | — | — |
| B cells | 319 | 0.17622654225846% | — | — | — |
| Goblet cells | 79 | 0.043642309838302% | — | — | — |
| Dendritic cells | 63 | 0.034803361010292% | — | — | — |
| Monocytes | 41 | 0.022649806371777% | — | — | — |
| Peritubular myoid cells | 30,760 | 16.99287912185% | — | — | — |
| Hepatocytes | 22,770 | 12.578929050863% | — | — | — |
| Acinar cells | 6,920 | 3.8228453681146% | — | — | — |
| Alveolar type 2 cells | 6,687 | 3.6941281758067% | — | — | — |
| Proximal tubule cells | 6,537 | 3.6112630305441% | — | — | — |
| Sertoli cells | 4,833 | 2.669914980361% | — | — | — |
| Ciliated cells | 3,940 | 2.1765911488976% | — | — | — |
| Pancreas ductal cells | 3,195 | 1.7650275940934% | — | — | — |
| Alveolar type 1 cells | 3,036 | 1.677190540115% | — | — | — |
| Mucous cells | 2,747 | 1.5175370269091% | — | — | — |
| Serous cells | 2,111 | 1.1661888109957% | — | — | — |
| Follicular cells | 1,456 | 0.80434434334897% | — | — | — |
| Basal cells | 757 | 0.41819276642525% | — | — | — |
| Urothelial cells | 596 | 0.3292508438434% | — | — | — |
| Connecting tubule cells | 583 | 0.32206919792064% | — | — | — |
| Enterocytes | 370 | 0.20440069164775% | — | — | — |
| Podocytes | 307 | 0.16959733063745% | — | — | — |
| Cycling gastric epithelial cell | 306 | 0.1690448963357% | — | — | — |
| Cholangiocytes | 245 | 0.13534640392891% | — | — | — |
| Cycling basal cells | 30 | 0.01657302905252% | — | — | — |
| Taste cells | 14 | 0.0077340802245093% | — | — | — |
| Cycling epithelial cells | 13 | 0.0071816459227586% | — | — | — |
| Stellate cells | 1,285 | 0.7098780777496% | — | — | — |
| Fibroblasts | 1,197 | 0.66126385919555% | — | — | — |
| Mesothelial cells | 910 | 0.5027152145931% | — | — | — |
| Other stromal cells | 372 | 0.20550556025125% | — | — | — |
| Granulosa cells | 206 | 0.11380146616064% | — | — | — |
| Adipocytes | 187 | 0.10330521442737% | — | — | — |
| Pericytes | 171 | 0.094466265599364% | — | — | — |
| Theca cells | 12 | 0.006629211621008% | — | — | — |
| Cardiomyocytes | 16,370 | 9.0433495196584% | — | — | — |
| Smooth muscle cells | 14,257 | 7.8760558400592% | — | — | — |
| Type II myonuclei | 31 | 0.017125463354271% | — | — | — |
| Spermatogonia | 6,788 | 3.7499240402835% | — | — | — |
| Spermatids | 151 | 0.08341757956435% | — | — | — |
| Endothelial cells | 27,710 | 15.307954501511% | — | — | — |
| Ascending loop of Henle cells | 2,366 | 1.3070595579421% | — | — | — |
| Principal cells | 1,936 | 1.0695128081893% | — | — | — |
| Intercalated cells | 558 | 0.30825834037687% | — | — | — |
| Colonic stem cells | 82 | 0.045299612743554% | — | — | — |
49 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Peritubular myoid cells | 30760 | 16.9929 | Epithelial cells | #FFA726 |
| celltype | Endothelial cells | 27710 | 15.308 | Endothelial cells | #29B6F6 |
| celltype | Hepatocytes | 22770 | 12.5789 | Epithelial cells | #EF5350 |
| celltype | Cardiomyocytes | 16370 | 9.0433 | Muscle cells | #2E7D32 |
| celltype | Smooth muscle cells | 14257 | 7.8761 | Muscle cells | #78909C |
| celltype | Acinar cells | 6920 | 3.8228 | Epithelial cells | #4CAF50 |
| celltype | Spermatogonia | 6788 | 3.7499 | Germ cells | #5C6BC0 |
| celltype | Alveolar type 2 cells | 6687 | 3.6941 | Epithelial cells | #FFA726 |
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