ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics System › sys05
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP037_sys/sys05/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
44,614
Cells represented in this release
🧬
Total Genes
16,630
Genes represented in the source matrix
🔷
Cell Types
23
Annotated cell-type groups
🫀
Tissues
6
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Kupffer cells | 1,140 | 2.5552517147084% | — | — | — |
| Mast cells | 609 | 1.3650423633837% | — | — | — |
| T cells | 488 | 1.093827049805% | — | — | — |
| Pancreas islet cells | 352 | 0.78899000313803% | — | — | — |
| Macrophages | 348 | 0.78002420764782% | — | — | — |
| Goblet cells | 79 | 0.17707446093155% | — | — | — |
| Hepatocytes | 22,770 | 51.037790827991% | — | — | — |
| Acinar cells | 6,920 | 15.510826198054% | — | — | — |
| Pancreas ductal cells | 3,195 | 7.1614291478011% | — | — | — |
| Mucous cells | 2,747 | 6.1572600528982% | — | — | — |
| Enterocytes | 370 | 0.82933608284395% | — | — | — |
| Cycling gastric epithelial cell | 306 | 0.68588335500067% | — | — | — |
| Cholangiocytes | 245 | 0.54915497377505% | — | — | — |
| Cycling basal cells | 30 | 0.067243466176537% | — | — | — |
| Taste cells | 14 | 0.031380284215717% | — | — | — |
| Cycling epithelial cells | 13 | 0.029138835343166% | — | — | — |
| Stellate cells | 1,285 | 2.8802618012283% | — | — | — |
| Pericytes | 171 | 0.38328775720626% | — | — | — |
| Adipocytes | 20 | 0.044828977451024% | — | — | — |
| Smooth muscle cells | 2,149 | 4.8168736271126% | — | — | — |
| Type II myonuclei | 31 | 0.069484915049088% | — | — | — |
| Endothelial cells | 1,250 | 2.801811090689% | — | — | — |
| Colonic stem cells | 82 | 0.1837988075492% | — | — | — |
23 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Hepatocytes | 22770 | 51.0378 | Epithelial cells | #EF5350 |
| celltype | Acinar cells | 6920 | 15.5108 | Epithelial cells | #4CAF50 |
| celltype | Pancreas ductal cells | 3195 | 7.1614 | Epithelial cells | #4CAF50 |
| celltype | Mucous cells | 2747 | 6.1573 | Epithelial cells | #F44336 |
| celltype | Smooth muscle cells | 2149 | 4.8169 | Muscle cells | #78909C |
| celltype | Stellate cells | 1285 | 2.8803 | Stromal cells | #FFCA28 |
| celltype | Endothelial cells | 1250 | 2.8018 | Endothelial cells | #29B6F6 |
| celltype | Kupffer cells | 1140 | 2.5553 | Immune cells | #FF8A65 |
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