ATLAS / POST-QC DATASET
Atlas / Post-QC Dataset Statistics Species › SP075
Validated descriptive statistics for cells already present in this atlas release; this is not a report of pre-filtering QC decisions.
๐ analysis_results_v2/SP075/releases/r20260808-v4/modules/stats
Scope: post_qc_descriptive / Source: validated immutable release
Limitations: Per-cell raw-count QC metrics were not exported in the v3 source release. / Statistics describe the selected post-QC cell universe; no pre/post filtering comparison is inferred.
๐ Overview
๐ QC Metrics
๐บ๏ธ UMAP
๐งฉ Composition
๐งฌ Markers
๐ Gene Stats
๐ Data 2
📋
Atlas / Post-QC OverviewDescriptive statistics for retained atlas cells; filtering metrics may be unavailable
🔬
Total Cells
1,359,661
Cells represented in this release
🧬
Total Genes
16,797
Genes represented in the source matrix
🔷
Cell Types
127
Annotated cell-type groups
🫀
Tissues
50
Annotated tissue groups
📦
Samples
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Clusters
N/A
Not exported by the post-QC descriptive statistics pipeline.
📊
Median Genes/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
📈
Median Counts/Cell
N/A
Not exported by the post-QC descriptive statistics pipeline.
⚡
Mito %
N/A
Not exported by the post-QC descriptive statistics pipeline.
🧪
Ribo %
N/A
Not exported by the post-QC descriptive statistics pipeline.
✅
Cells Passing
N/A
Validated Raw Count Thresholds Not Available.
🚫
Cells Filtered
N/A
Validated Raw Count Thresholds Not Available.
✅
Pass Rate
N/A
Validated Raw Count Thresholds Not Available.
QC filtering metrics: N/A
Validated Raw Count Thresholds Not Available. This release describes cells after upstream QC; it does not reconstruct filtering thresholds or removed-cell counts.
๐ท Cell Type / Cluster Breakdown
| Name | Cells | % | Med Genes | Med Counts | Med Mito% |
|---|---|---|---|---|---|
| Granule cells | 75,392 | 5.5449115625145% | — | — | — |
| Excitatory neurons | 42,869 | 3.152918264185% | — | — | — |
| Inhibitory neurons | 16,326 | 1.2007404786929% | — | — | — |
| Oligodendrocytes | 10,225 | 0.75202568875624% | — | — | — |
| Astrocytes | 8,875 | 0.65273623351703% | — | — | — |
| Ganglion cells | 2,955 | 0.21733358535694% | — | — | — |
| Melanocytes | 2,751 | 0.20232984545412% | — | — | — |
| Chromaffin cells | 2,464 | 0.18122164274771% | — | — | — |
| Microglia | 1,932 | 0.142094242609% | — | — | — |
| Rod cells | 1,747 | 0.128487909854% | — | — | — |
| Oligodendrocyte progenitor cells | 1,735 | 0.12760533691854% | — | — | — |
| Amacrine cells | 1,591 | 0.11701446169302% | — | — | — |
| Bipolar cells | 1,469 | 0.10804163684919% | — | — | — |
| Schwann cells | 1,346 | 0.098995264260724% | — | — | — |
| Enteric glial cells | 1,250 | 0.091934680777047% | — | — | — |
| Muller cells | 1,068 | 0.078548991255909% | — | — | — |
| Cone cells | 1,042 | 0.076636749895746% | — | — | — |
| Motor neurons | 916 | 0.06736973407342% | — | — | — |
| Purkinje cells | 291 | 0.021402393684896% | — | — | — |
| Enteric neuronal progenitor cells | 233 | 0.017136624496841% | — | — | — |
| Horizontal cells | 222 | 0.016327599306003% | — | — | — |
| Glial cells | 143 | 0.010517327480894% | — | — | — |
| Enteric neurons | 120 | 0.0088257293545965% | — | — | — |
| Adrenergic neurons | 35 | 0.0025741710617573% | — | — | — |
| T cells | 58,642 | 4.3129868401021% | — | — | — |
| B cells | 35,413 | 2.604546280286% | — | — | — |
| Macrophages | 20,094 | 1.4778683804272% | — | — | — |
| Monocytes | 10,057 | 0.73966966765981% | — | — | — |
| Natural killer T cells | 9,135 | 0.67185864711866% | — | — | — |
| Plasma B cells | 7,401 | 0.54432685794474% | — | — | — |
| Dendritic cells | 6,698 | 0.49262279347573% | — | — | — |
| Goblet cells | 4,641 | 0.34133508278902% | — | — | — |
| Kupffer cells | 2,509 | 0.18453129125569% | — | — | — |
| Cycling B cells | 2,458 | 0.18078035627998% | — | — | — |
| Club cells | 2,056 | 0.15121416294209% | — | — | — |
| Natural killer cells | 1,794 | 0.13194465385122% | — | — | — |
| Erythroid cells | 1,626 | 0.11958863275478% | — | — | — |
| Pancreas islet cells | 1,407 | 0.10348167668264% | — | — | — |
| Mast cells | 524 | 0.038539018181738% | — | — | — |
| Neutrophils | 282 | 0.020740463983302% | — | — | — |
| Cycling T cells | 265 | 0.019490152324734% | — | — | — |
| Common myeloid progenitors | 260 | 0.019122413601626% | — | — | — |
| Megakaryocyte erythrocyte progenitors | 186 | 0.013679880499625% | — | — | — |
| Common lymphoid progenitors | 24 | 0.0017651458709193% | — | — | — |
| Acinar cells | 91,947 | 6.7624944747257% | — | — | — |
| Luminal epithelial cells | 76,631 | 5.6360372181007% | — | — | — |
| Hepatocytes | 72,703 | 5.3471416772269% | — | — | — |
| Stereociliated cells | 54,488 | 4.0074695089438% | — | — | — |
| Urothelial cells | 21,701 | 1.5960596060342% | — | — | — |
| Oviduct epithelial cells | 20,036 | 1.4736026112391% | — | — | — |
| Alveolar type 1 cells | 20,027 | 1.4729406815375% | — | — | — |
| Proximal tubule cells | 18,989 | 1.3965981226203% | — | — | — |
| Glomerulosa cells | 16,471 | 1.211404901663% | — | — | — |
| Glandular cells | 16,223 | 1.1931650609968% | — | — | — |
| Pinealocytes | 13,771 | 1.0128259911846% | — | — | — |
| Lactotropes | 13,263 | 0.97546373691678% | — | — | — |
| Fasciculata cells | 12,799 | 0.94133758341234% | — | — | — |
| Mucous cells | 12,712 | 0.93493892963025% | — | — | — |
| Somatotropes | 11,981 | 0.88117552831184% | — | — | — |
| Basal cells | 11,667 | 0.85808153650064% | — | — | — |
| Ciliated cells | 9,984 | 0.73430068230243% | — | — | — |
| Enterocytes | 9,351 | 0.68774495995693% | — | — | — |
| Serous cells | 8,794 | 0.64677886620268% | — | — | — |
| Follicular cells | 8,020 | 0.58985291186553% | — | — | — |
| Taste cells | 7,171 | 0.52741087668176% | — | — | — |
| Alveolar type 2 cells | 5,583 | 0.4106170582226% | — | — | — |
| Corticotropes | 4,927 | 0.36236973775081% | — | — | — |
| Distal convoluted tubule cells | 4,436 | 0.32625779514158% | — | — | — |
| Cycling epithelial cells | 4,386 | 0.3225804079105% | — | — | — |
| Retinal pigmentary epithelial cells | 4,158 | 0.30581152213677% | — | — | — |
| Gonadotropes | 3,758 | 0.27639242428811% | — | — | — |
| Peritubular myoid cells | 3,620 | 0.26624283553033% | — | — | — |
| Descending limb of loop of Henle cells | 3,343 | 0.24587011027013% | — | — | — |
| Epididymal epithelial cells | 3,079 | 0.22645350569002% | — | — | — |
| Squamous cells | 2,866 | 0.21078783608561% | — | — | — |
| Pancreas ductal cells | 2,437 | 0.17923585364293% | — | — | — |
| Keratinocytes | 2,389 | 0.17570556190109% | — | — | — |
| Pseudostratified columnar cells | 2,309 | 0.16982174233136% | — | — | — |
| Connecting tubule cells | 2,238 | 0.16459985246322% | — | — | — |
| Progenitor-like epithelial cells | 1,698 | 0.12488407036754% | — | — | — |
| Principal like cells | 1,442 | 0.1060558477444% | — | — | — |
| Podocytes | 1,419 | 0.1043642496181% | — | — | — |
| Thyrotropes | 989 | 0.072738719430799% | — | — | — |
| Melanotropes | 959 | 0.07053228709215% | — | — | — |
| Cycling basal cells | 955 | 0.070238096113664% | — | — | — |
| Cholangiocytes | 727 | 0.05346921033993% | — | — | — |
| Surface epithelial cells | 711 | 0.052292446425984% | — | — | — |
| Parietal cells | 611 | 0.04493767196382% | — | — | — |
| Sertoli cells | 572 | 0.042069309923577% | — | — | — |
| Cycling glandular cells | 457 | 0.033611319292088% | — | — | — |
| Prostate progenitor cells | 339 | 0.024932685426735% | — | — | — |
| Cycling gastric epithelial cell | 317 | 0.023314635045059% | — | — | — |
| Cycling luminal epithelial cells | 269 | 0.01978434330322% | — | — | — |
| Cycling intermediate cells | 162 | 0.011914734628705% | — | — | — |
| Cycling ciliated cells | 66 | 0.0048541511450281% | — | — | — |
| Neuroendocrine cells | 26 | 0.0019122413601626% | — | — | — |
| Cycling stereociliated cells | 19 | 0.0013974071478111% | — | — | — |
| Other stromal cells | 65,632 | 4.8270855750073% | — | — | — |
| Adipocytes | 27,080 | 1.9916729243539% | — | — | — |
| Mesothelial cells | 25,395 | 1.8677449746665% | — | — | — |
| Adipocyte progenitor cells | 23,113 | 1.6999090214399% | — | — | — |
| Granulosa cells | 15,275 | 1.1234417990955% | — | — | — |
| Homeostatic chondrocytes | 12,996 | 0.9558264891028% | — | — | — |
| Pericytes | 10,034 | 0.73797806953351% | — | — | — |
| Fibroblasts | 5,786 | 0.42554725038079% | — | — | — |
| Folliculostellate cells | 3,805 | 0.27984916828533% | — | — | — |
| Adventitial cells | 3,745 | 0.27543630360803% | — | — | — |
| Theca cells | 2,453 | 0.18041261755688% | — | — | — |
| Leydig cells | 2,133 | 0.15687733927795% | — | — | — |
| Stellate cells | 1,936 | 0.14238843358749% | — | — | — |
| Mesenchymal cells | 1,243 | 0.091419846564695% | — | — | — |
| Smooth muscle cells | 52,477 | 3.8595649945097% | — | — | — |
| Type II myonuclei | 36,384 | 2.6759611403137% | — | — | — |
| Type I myonuclei | 6,270 | 0.46114435877767% | — | — | — |
| Cardiomyocytes | 5,802 | 0.42672401429474% | — | — | — |
| Satellite cells | 1,398 | 0.10281974698105% | — | — | — |
| Neuromuscular junctions | 394 | 0.028977811380925% | — | — | — |
| Myotendinous junctions | 149 | 0.010958613948624% | — | — | — |
| Skeletal myonuclei | 72 | 0.0052954376127579% | — | — | — |
| Spermatocytes | 15,867 | 1.1669820639115% | — | — | — |
| Spermatids | 4,497 | 0.3307442075635% | — | — | — |
| Spermatogonia | 133 | 0.0097818500346778% | — | — | — |
| Endothelial cells | 66,765 | 4.9104151696636% | — | — | — |
| Ascending loop of Henle cells | 14,187 | 1.0434218529472% | — | — | — |
| Principal cells | 11,499 | 0.84572551540421% | — | — | — |
| Intercalated cells | 10,556 | 0.776369992226% | — | — | — |
| Sebocytes | 120 | 0.0088257293545965% | — | — | — |
127 groups
๐
QC MetricsInteractive boxplots and scatter plots
๐ Distribution Summary
| Metric | Min | Q1 | Median | Mean | Q3 | Max | Std |
|---|
๐ป Genes/Cell BOXPLOT
๐ป Counts/Cell BOXPLOT
๐ป Mito % BOXPLOT
๐ป Ribo % BOXPLOT
๐ฌ Genes vs Counts SCATTER
๐บ๏ธ
UMAP EmbeddingInteractive 2D projection colored by cell type / cluster
๐บ๏ธ UMAP by Group INTERACTIVE
๐งฉ
Cell CompositionCell type proportions overall and per sample
๐ฅง Overall PIE
๐ Per-sample STACKED BAR
๐งฌ
Marker GenesTop markers per cluster and expression heatmap
๐ฅ Expression Heatmap Z-SCORE
๐
Gene StatisticsTop expressed genes and detection rates
Limited gene-statistics scope: mapped longevity genes only
Descriptive source-X expression summaries for mapped longevity genes only; this is not a whole-transcriptome top-gene analysis. Rankings and percentages on this tab are restricted to the mapped longevity panel and must not be interpreted as genome-wide top-expression results.
๐ Top Expressed BAR
๐
Data FilesDownload QC data tables
๐ Available Files
| File | Description | Action |
|---|---|---|
| composition.csv | Composition | ๐ฅ Download |
| gene_stats.csv | Gene Stats | ๐ฅ Download |
๐ Preview: composition.csv
๐ฅ Full CSV| grouping | group | count | pct | category | color |
|---|---|---|---|---|---|
| celltype | Acinar cells | 91947 | 6.7625 | Epithelial cells | #4CAF50 |
| celltype | Luminal epithelial cells | 76631 | 5.636 | Epithelial cells | #4682B4 |
| celltype | Granule cells | 75392 | 5.5449 | Neural cells | #9370DB |
| celltype | Hepatocytes | 72703 | 5.3471 | Epithelial cells | #AB47BC |
| celltype | Endothelial cells | 66765 | 4.9104 | Endothelial cells | #BA68C8 |
| celltype | Other stromal cells | 65632 | 4.8271 | Stromal cells | #008B8B |
| celltype | T cells | 58642 | 4.313 | Immune cells | #D4E157 |
| celltype | Stereociliated cells | 54488 | 4.0075 | Epithelial cells | #FFC0CB |
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